BAC Information

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BAC

Clone NameB6Ng01-297K01
Chromosome7 (Build37)
Map Location 123,142,415 - 123,143,525
singlet/doubletsinglet
Overlap geneSox6
Upstream geneLOC668472, LOC100042779
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297K01.bB6Ng01-297K01.g
ACCGA092940GA092941
length1,2041,113
definitionB6Ng01-297K01.b B6Ng01-297K01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgatttct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataagcttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttgat
taggattttgtccctttgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttaatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
ttggaggtactcagagctatgagtttccctcttagaaatgctttcattgt
gtccaaggtttgggtacgttgtggctcattttcataaactcctaaaaagt
ctttaatttcttctcttatcccttcttggaccaaggttccattggaaaga
gggtgtgttccattccagcgatgtggccttcatcctagtggttattggag
aatacgtctaaggcatgggggctgcataggaaactgggtacaattcaacc
tttt
gaattcttagcagatctgtctcacttcttggtgatgaagggtttccaggg
aaagaatgtgtacttggaagagtccttcctcatggccatgcattggcctt
gaggggctgttgcaatgggttcacagagatgccatgctgttcaccctgag
tccttctagactgaagtccctgtgagtattcatccgggtgtgttttctca
ttgtgggcacctcactatggacctgatgcagggtaaagccaacgtggcat
gctttcaccagtggggccttggtctgtgggtcttctggggttgccagtta
aactaaatgttccttcactgctgccagtccttgtggaaaagggtattata
caggatcctgtcattccatgttggcccacaactgcctcctttgcaggaca
tttaaatactttcttaaatcatggctgcttaacatgtttgccagacaatt
ctaatagttaggtgttgttatctattgattgacttgttcatttaatttgt
gaactttccagttctttgacaatgcattttgatttaaacctggacatctt
ggtactgtcttatgacaaaaccttctgctttagtcaaatccctttgtagc
agggtaggatgctgctcttttactgccaggtgaatttagcagttcaggtg
cccatctagtgacaagattcttgttattgctgtgtgaaaagttccgactc
tcagaatgatcctcactgtcattcaagtggaaatgaccttttgccaatgg
gcagtgcttttggactctcctgtgggtacactctgatatcactttagtga
gaatgagaggataccgtgaccttggacagcacaaccagagaagcagttgc
tgactggcagggaaaggcctctccctggtcttttctgacaattctgagat
gagagagtgatgttcagaaacctcatttacagccatgagaaagtgggact
ctagtttccatgtggcttttgtttgaatccacttaaggagggcactacag
accttttcatctcagtgtctacttggaagtcaggagtggtattgtagaat
gggtccgcctgcttaattcctccactccttgtctattaggccaaagaaga
aacgaactgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123142415_123143525
seq2: B6Ng01-297K01.g_68_1180 (reverse)

seq1  AGAGCAGTCTGTT--CTCTTTGGCCTAAT-GACCAGGAAATTGAAAGAAT  47
      ||||||||  |||   ||||||||||||| ||| |||  | || | ||||
seq2  AGAGCAGTTCGTTTCTTCTTTGGCCTAATAGACAAGG--AGTGGAGGAAT  48

seq1  TAGGCAAGGCGACCCATTCTACAATAACCACT-CTGACTT-CAAGTAGAC  95
      || ||| |  ||||||||||||||| |||||| ||||||| |||||||||
seq2  TAAGCAGGCGGACCCATTCTACAAT-ACCACTCCTGACTTCCAAGTAGAC  97

seq1  ACTGGAGATGAAAAGGTCTTGTAGTGCCCT-CTTAAGT-GATTCAAACAA  143
      ||| |||||||||||||| ||||||||||| ||||||| |||||||||||
seq2  ACT-GAGATGAAAAGGTC-TGTAGTGCCCTCCTTAAGTGGATTCAAACAA  145

seq1  AAGCCACATGGAAACTAGAGTCCCACTTTCTCATGGCTGTAAATGAGG-T  192
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCCACATGGAAACTAGAGTCCCACTTTCTCATGGCTGTAAATGAGGTT  195

seq1  TCTGAACATCACTCTCTCATCTCAGAATTGTCAGAAAAGACCAGGGAGAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACATCACTCTCTCATCTCAGAATTGTCAGAAAAGACCAGGGAGAG  245

seq1  GCCTTTCCCCTGCCAGTCAGCAACTGCTTCTCTGGTTGTGCTGTCCAAGG  292
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTT-CCCTGCCAGTCAGCAACTGCTTCTCTGGTTGTGCTGTCCAAGG  294

seq1  TCACGGTATCCTCTCATTCTCACTAAAGTGATATCAGAGTGTACCCACAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGTATCCTCTCATTCTCACTAAAGTGATATCAGAGTGTACCCACAG  344

seq1  GAGAGTCCAAAAGCACTGCCCATTGGCAAAAGGTCATTTCCACTTGAATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCAAAAGCACTGCCCATTGGCAAAAGGTCATTTCCACTTGAATG  394

seq1  ACAGTGAGGATCATTCTGAGAGTCGGAACTTTTCACACAGCAATAACAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGATCATTCTGAGAGTCGGAACTTTTCACACAGCAATAACAAG  444

seq1  AATCTTGTCACTAGATGGGCACCTGAACTGCTAAATTCACCTGGCAGTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTCACTAGATGGGCACCTGAACTGCTAAATTCACCTGGCAGTAA  494

seq1  AAGAGCAGCATCCTACCCTGCTACAAAGGGATTTGACTAAAGCAGAAGGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCATCCTACCCTGCTACAAAGGGATTTGACTAAAGCAGAAGGT  544

seq1  TTTGTCATAAGACAGTACCAAGATGTCCAGGTTTAAATCAAAATGCATTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATAAGACAGTACCAAGATGTCCAGGTTTAAATCAAAATGCATTG  594

seq1  TCAAAGAACTGGAAAGTTCACAAATTAAATGAACAAGTCAATCAATAGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACTGGAAAGTTCACAAATTAAATGAACAAGTCAATCAATAGAT  644

seq1  AACAACACCTAACTATTAGAATTGTCTGGCAAACATGTTAAGCAGCCATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACCTAACTATTAGAATTGTCTGGCAAACATGTTAAGCAGCCATG  694

seq1  ATTTAAGAAAGTATTTAAATGTCCTGCAAAGGAGGCAGTTGTGGGCCAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGAAAGTATTTAAATGTCCTGCAAAGGAGGCAGTTGTGGGCCAAC  744

seq1  ATGGAATGACAGGATCCTGTATAATACCCTTTTCCACAAGGACTGGCAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGACAGGATCCTGTATAATACCCTTTTCCACAAGGACTGGCAGC  794

seq1  AGTGAAGGAACATTTAGTTTAACTGGCAACCCCAGAAGACCCACAGACCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGGAACATTTAGTTTAACTGGCAACCCCAGAAGACCCACAGACCA  844

seq1  AGGCCCCACTGGTGAAAGCATGCCACGTTGGCTTTACCCTGCATCAGGTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCACTGGTGAAAGCATGCCACGTTGGCTTTACCCTGCATCAGGTC  894

seq1  CATAGTGAGGTGCCCACAATGAGAAAACACACCCGGATGAATACTCACAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGGTGCCCACAATGAGAAAACACACCCGGATGAATACTCACAG  944

seq1  GGACTTCAGTCTAGAAGGACTCAGGGTGAACAGCATGGCATCTCTGTGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAGTCTAGAAGGACTCAGGGTGAACAGCATGGCATCTCTGTGAA  994

seq1  CCCATTGCAACAGCCCCTCAAGGCCAATGCATGGCCATGAGGAAGGACTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCAACAGCCCCTCAAGGCCAATGCATGGCCATGAGGAAGGACTC  1044

seq1  TTCCAAGTACACATTCTTTCCCTGGAAACCCTTCATCACCAAGAAGTGAG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTACACATTCTTTCCCTGGAAACCCTTCATCACCAAGAAGTGAG  1094

seq1  ACAGATCTGCTAAGAATTC  1111
      |||||||||||||||||||
seq2  ACAGATCTGCTAAGAATTC  1113