BAC Information

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BAC

Clone NameB6Ng01-300C17
Chromosome7 (Build37)
Map Location 51,455,230 - 51,604,932
singlet/doubletdoublet
Overlap geneKlk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1
Upstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24
Downstream gene1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300C17.bB6Ng01-300C17.g
ACCGA094814GA094815
length1,126346
definitionB6Ng01-300C17.b B6Ng01-300C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,455,230 - 51,456,351)(51,604,587 - 51,604,932)
sequence
gaattcccaaaacccagacaaggctctgacttcttctcaagccttggaga
ctctaaattccaaatcagaggattctcattggaaaaatgaaatgaatctc
tctcgcgcgcgcgcgctctcgctctcactctctctgtctttctctgtctc
tctcattgcccttccaacccttggtccaaaacaataaagtggcctgacat
tatacccaattcctgattgtagaattatttctgtccccacagatcaccat
atacaagaccagccatatacaagtcctttgcctggatcccctgacaattt
cccctgattaactgtgtcctgcaacagtaaacctcaatatctgtgccaaa
cctcccctcccccactgcccctgttgcagatgctgcacctcctgtccagt
ctcgaattgttggaggatttaaatgtgagaagaattcccaaccctggcat
gtggctgtgtaccgatacacccaatatttatgcgggggtgtcctgttgga
ccccaactgggttctcacagctgcccactgctatgacgagtgagtaaggg
tggaaacaggaaagcagggtggcagccagagaacatgactccaggacagg
ctggggtactagagggcaggcaggtgggactggcagaaaatctatccatg
atctctttactccaccctccagatttgtgtaccaagtcccgtgtcttgcc
tttctgtcttattgtctgtctgtctcctatctgaatccacatctgcgtgt
ctcggtggtcatctgtcactgtgtgtatctcccttgggactctgacaaca
tctgtctgggtctggatctcatgtgttgtcttttatcactactgaccata
gtgcgaacaagacccaaagggcccttgagattagaaagtgctgtccctga
aggtaggctgtgagagaagtccccactctcctcagagcagctctgccttt
aggaccttctgtctactctaggacacacagagaagggctggtcagaactg
gagctgggtgaggtaactgagtacagagaagagctggatgctggggaggg
gagaggggagagcttcaaccttgggcctcaggccagccttacctgcgctg
gggagatcagaccctgtctagctgca
aaggaagtgtcagctacggcataagactctgtctcagaaaaacaacaaaa
catgcaagaaaacaaaataagtccaaccctagaaagacagagacactgtg
gagggtgcttttcacaggtcccaagtaacccagggacagtttaagtgcct
gttatcccattagagcagcagagtatgagagtctggggacaggctcctta
cagggatcaagctgatgggggaggggccatggtggtgggggagggaccat
gtgatggaggagaggccagaaagatgggggacggactgtggtgatagagg
aggggccatgcgatggaggaggggccagggagatgggggaggggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51455230_51456351
seq2: B6Ng01-300C17.b_46_1171

seq1  GAATTCCCAAAACCCAGACAAGGCTCTGACTTCTTCTCAAGCCTTGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAACCCAGACAAGGCTCTGACTTCTTCTCAAGCCTTGGAGA  50

seq1  CTCTAAATTCCAAATCAGAGGATTCTCATTGGAAAAATGAAATGAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATTCCAAATCAGAGGATTCTCATTGGAAAAATGAAATGAATCTC  100

seq1  TCTCGCGCGCGCGCGCTCTCGCTCTCACTCTCTCTGTCTTTCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCGCGCGCGCGCTCTCGCTCTCACTCTCTCTGTCTTTCTCTGTCTC  150

seq1  TCTCATTGCCCTTCCAACCCTTGGTCCAAAACAATAAAGTGGCCTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGCCCTTCCAACCCTTGGTCCAAAACAATAAAGTGGCCTGACAT  200

seq1  TATACCCAATTCCTGATTGTAGAATTATTTCTGTCCCCACAGATCACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAATTCCTGATTGTAGAATTATTTCTGTCCCCACAGATCACCAT  250

seq1  ATACAAGACCAGCCATATACAAGTCCTTTGCCTGGATCCCCTGACAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGACCAGCCATATACAAGTCCTTTGCCTGGATCCCCTGACAATTT  300

seq1  CCCCTGATTAACTGTGTCCTGCAACAGTAAACCTCAATATCTGTGCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGATTAACTGTGTCCTGCAACAGTAAACCTCAATATCTGTGCCAAA  350

seq1  CCTCCCCTCCCCCACTGCCCCTGTTGCAGATGCTGCACCTCCTGTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCCCCACTGCCCCTGTTGCAGATGCTGCACCTCCTGTCCAGT  400

seq1  CTCGAATTGTTGGAGGATTTAAATGTGAGAAGAATTCCCAACCCTGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATTGTTGGAGGATTTAAATGTGAGAAGAATTCCCAACCCTGGCAT  450

seq1  GTGGCTGTGTACCGATACACCCAATATTTATGCGGGGGTGTCCTGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTGTACCGATACACCCAATATTTATGCGGGGGTGTCCTGTTGGA  500

seq1  CCCCAACTGGGTTCTCACAGCTGCCCACTGCTATGACGAGTGAGTAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTGGGTTCTCACAGCTGCCCACTGCTATGACGAGTGAGTAAGGG  550

seq1  TGGAAACAGGAAAGCAGGGTGGCAGCCAGAGAACATGACTCCAGGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGGAAAGCAGGGTGGCAGCCAGAGAACATGACTCCAGGACAGG  600

seq1  CTGGGGTACTAGAGGGCAGGCAGGTGGGACTGGCAGAAAATCTATCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTACTAGAGGGCAGGCAGGTGGGACTGGCAGAAAATCTATCCATG  650

seq1  ATCTCTTTACTCCACCCTCCAGATTTGTGTACCAAGTCCCGTGTCTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTACTCCACCCTCCAGATTTGTGTACCAAGTCCCGTGTCTTGCC  700

seq1  TTTCTGTCTTATTGTCTGTCTGTCTCCTATCTGAATCCACATCTGCGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTATTGTCTGTCTGTCTCCTATCTGAATCCACATCTGCGTGT  750

seq1  CTCGGTGGTCATCTGTCACTGTGTGTATCTCCCTTGGGACTCTGACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGGTCATCTGTCACTGTGTGTATCTCCCTTGGGACTCTGACAACA  800

seq1  TCTGTCTGGGTCTGGATCTCATGTGTTGTCTTTTATCACTACTGACCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGGGTCTGGATCTCATGTGTTGTCTTTTATCACTACTGACCATA  850

seq1  GTGCGAACAAGACCCAAAGGGCCCTTGAGATTAGAAAGTGCTGTCCCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAACAAGACCCAAAGGGCCCTTGAGATTAGAAAGTGCTGTCCCTGA  900

seq1  AGGTAGGCTGTGAGAGAAGTCCCCACTCTCCTCAGAGCAGCTCTGCCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTGTGAGAGAAGTCCCCACTCTCCTCAGAGCAGCTCTGCCTTT  950

seq1  AGGACCTTCTGTCTACTCTAGGACACACAGAGAAGGGCTGGTCAGAACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCTGTCTACTCTAGGACACACAGAGAAGGGCTGGTCAGAACTG  1000

seq1  GAGCTGGGTGAGGTAACTGAGTACAGAG-AGAGCTGGATGCTGGGGAGG-  1048
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAGCTGGGTGAGGTAACTGAGTACAGAGAAGAGCTGGATGCTGGGGAGGG  1050

seq1  --GAGGGGAGGGCTCAGACCTTGGGCTGCAGGCCAGGCCTTACCT--GCT  1094
        |||||||| |||   |||||||||  ||||||| |||||||||  |||
seq2  GAGAGGGGAGAGCTTCAACCTTGGGCCTCAGGCCA-GCCTTACCTGCGCT  1099

seq1  GGGGAAGTTCAG-CCCTGTCCTAGCTGCA  1122
      |||| || |||| |||||| |||||||||
seq2  GGGG-AGATCAGACCCTGT-CTAGCTGCA  1126

seq1: chr7_51604587_51604932
seq2: B6Ng01-300C17.g_71_416 (reverse)

seq1  GGCCCCTCCCCCATCTCCCTGGCCCCTCCTCCATCGCATGGCCCCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCCCCATCTCCCTGGCCCCTCCTCCATCGCATGGCCCCTCCTC  50

seq1  TATCACCACAGTCCGTCCCCCATCTTTCTGGCCTCTCCTCCATCACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCACAGTCCGTCCCCCATCTTTCTGGCCTCTCCTCCATCACATGG  100

seq1  TCCCTCCCCCACCACCATGGCCCCTCCCCCATCAGCTTGATCCCTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCCACCACCATGGCCCCTCCCCCATCAGCTTGATCCCTGTAAG  150

seq1  GAGCCTGTCCCCAGACTCTCATACTCTGCTGCTCTAATGGGATAACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGTCCCCAGACTCTCATACTCTGCTGCTCTAATGGGATAACAGGC  200

seq1  ACTTAAACTGTCCCTGGGTTACTTGGGACCTGTGAAAAGCACCCTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACTGTCCCTGGGTTACTTGGGACCTGTGAAAAGCACCCTCCACA  250

seq1  GTGTCTCTGTCTTTCTAGGGTTGGACTTATTTTGTTTTCTTGCATGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGTCTTTCTAGGGTTGGACTTATTTTGTTTTCTTGCATGTTTT  300

seq1  GTTGTTTTTCTGAGACAGAGTCTTATGCCGTAGCTGACACTTCCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTCTGAGACAGAGTCTTATGCCGTAGCTGACACTTCCTT  346