BAC Information

Click to search

BAC

Clone NameB6Ng01-309B04
Chromosome7 (Build37)
Map Location 103,016,179 - 103,149,801
singlet/doubletdoublet
Overlap geneFrda-ps
Upstream geneLOC100040132, LOC666823
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309B04.bB6Ng01-309B04.g
ACCGA101404GA101405
length1,103407
definitionB6Ng01-309B04.b B6Ng01-309B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,016,179 - 103,017,298)(103,149,395 - 103,149,801)
sequence
gaattcaccttcagtgactctactaggttattcagctttctagcactata
ataagtgaccagagattatcaatgcaaagaagaaacctatttcttttcac
tcgtggtttctgagacctccattcatagtcacttggcccatttctttggt
cctgtgacagcacagtgctttgtgggggtttggatatatgacagaggagg
cagctcatcacatggcagtcgagaagttgagcgggggaagacttgactgg
gtctcaacataccctggaaaagcgcactccaatggcctcaccccctctga
atagtctgcagctcccaatgcttttacagtgtcgaggagcaccatcagct
ggaagcaagccttcaaaacacaagccttttgagaaagttaaatccaaact
ggagcaccatgctttctgacagtatctcttgctctaaatactcctcatcc
tcatgttatgcagccaacagtgcactgtgcactgtagctctgtcttctcc
actactgaaatacaagctggttaaggaaaggaactgttttctgttgctcc
tccccactgctctgcccagcagaacacctggcacagacacagtgcacacg
ttttcaaagagtaaatttagtttgtaatgccttttcaaaacactccaata
cacgcattttcaatactacttctgcctttccgtgactgagaaatctttgg
gcaaaaaaataaatttttgacctagatttagcattcaaatctcagcttgg
gcataaaggcatttgagtatttgagttatttgttggaccctatatttttg
gcaacaattttcccttcaacacctaaagccatttgtgttcttgacagttt
gtcgttagtgaaaaccagaatttgctgagaactgagagtattaagttctt
tccaaaaggcattgtgcttaagagccctgattctacaactgccatcaaat
atgcaaacttttgagccccttttgacccctggcataggacattgcctgtg
tttactcttagtgtagcactctaggacacagtgattttagtagtattgat
agcaggcttcttaccagttaaaaaatagagaaaaagcataatattatcca
ctt

gaattctcacattaagcttgtttggaaacactgctatccctggtctgtag
agggggaaaaaacattgtgctgaaagcttaataatttattgggaccccac
aatgggaaattatctaacttgaattctgaatctgagcctgcctgactctg
atgtgactcatgttctcaactcccactatacatggctgttaggattcatg
gatcttatgctgctaggactccccaacatgctggtgtcaacgtcatacct
aatggcggccacaagtgactacctttgctttaaatattgtatgtctgtgc
atgtgcatatgtttgtgtgttcatgtatgtgtgatgcctatgaccacagg
tattctctctctctctctctctctctctctctctctctctctctctctct
ctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_103016179_103017298
seq2: B6Ng01-309B04.b_46_1148

seq1  GAATTCACCTTCAGTGACTCTACTAGGTTATTCAGCTTTCTAGCACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTCAGTGACTCTACTAGGTTATTCAGCTTTCTAGCACTATA  50

seq1  ATAAGTGACCAGAGATTATCAATGCAAAGAAGAAACCTATTTCTTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGACCAGAGATTATCAATGCAAAGAAGAAACCTATTTCTTTTCAC  100

seq1  TCGTGGTTTCTGAGACCTCCATTCATAGTCACTTGGCCCATTTCTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTTTCTGAGACCTCCATTCATAGTCACTTGGCCCATTTCTTTGGT  150

seq1  CCTGTGACAGCACAGTGCTTTGTGGGGGTTTGGATATATGACAGAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACAGCACAGTGCTTTGTGGGGGTTTGGATATATGACAGAGGAGG  200

seq1  CAGCTCATCACATGGCAGTCGAGAAGTTGAGCGGGGGAAGACTTGACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATCACATGGCAGTCGAGAAGTTGAGCGGGGGAAGACTTGACTGG  250

seq1  GTCTCAACATACCCTGGAAAAGCGCACTCCAATGGCCTCACCCCCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAACATACCCTGGAAAAGCGCACTCCAATGGCCTCACCCCCTCTGA  300

seq1  ATAGTCTGCAGCTCCCAATGCTTTTACAGTGTCGAGGAGCACCATCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTGCAGCTCCCAATGCTTTTACAGTGTCGAGGAGCACCATCAGCT  350

seq1  GGAAGCAAGCCTTCAAAACACAAGCCTTTTGAGAAAGTTAAATCCAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGCCTTCAAAACACAAGCCTTTTGAGAAAGTTAAATCCAAACT  400

seq1  GGAGCACCATGCTTTCTGACAGTATCTCTTGCTCTAAATACTCCTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACCATGCTTTCTGACAGTATCTCTTGCTCTAAATACTCCTCATCC  450

seq1  TCATGTTATGCAGCCAACAGTGCACTGTGCACTGTAGCTCTGTCTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATGCAGCCAACAGTGCACTGTGCACTGTAGCTCTGTCTTCTCC  500

seq1  ACTACTGAAATACAAGCTGGTTAAGGAAAGGAACTGTTTTCTGTTGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAAATACAAGCTGGTTAAGGAAAGGAACTGTTTTCTGTTGCTCC  550

seq1  TCCCCACTGCTCTGCCCAGCAGAACACCTGGCACAGACACAGTGCACACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTGCTCTGCCCAGCAGAACACCTGGCACAGACACAGTGCACACG  600

seq1  TTTTCAAAGAGTAAATTTAGTTTGTAATGCCTTTTCAAAACACTCCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGAGTAAATTTAGTTTGTAATGCCTTTTCAAAACACTCCAATA  650

seq1  CACGCATTTTCAATACTACTTCTGCCTTTCCGTGACTGAGAAATCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATTTTCAATACTACTTCTGCCTTTCCGTGACTGAGAAATCTTTGG  700

seq1  GCAAAAAAATAAATTTTTGACCTAGATTTAGCATTCAAATCTCAGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAATAAATTTTTGACCTAGATTTAGCATTCAAATCTCAGCTTGG  750

seq1  GCATAAAGGCATTTGAGTATTTGAGTTATTTGTTGGACCCTATATTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGGCATTTGAGTATTTGAGTTATTTGTTGGACCCTATATTTTTG  800

seq1  GCAACAATTTTCCCTTCAACACCTAAAGCCATTTGTGTTCTTGACAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATTTTCCCTTCAACACCTAAAGCCATTTGTGTTCTTGACAGTTT  850

seq1  GTCGTTAGTGAAAACCAGAATTTGCTGAGAACTGAGAGTATTAAGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTAGTGAAAACCAGAATTTGCTGAGAACTGAGAGTATTAAGTTCTT  900

seq1  TCCAAAAGGCATTGTGCTTAAGAGCCCTGATTCTACAACTGCCATCAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCAAAAGGCATTGTGCTTAAGAGCCCTGATTCTACAACTGCCATC-AAA  949

seq1  TATGCAAACTTTTGAGCCCCTTTTGACCCCTGGCATAGGACATTGCCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAACTTTTGAGCCCCTTTTGACCCCTGGCATAGGACATTGCCTGT  999

seq1  GTTTACTCTTAGTGTAGCACTTCTAGGACACAGTGGATTTTTAGTAGTTA  1050
      |||||||||||||||||||| ||||||||||||||   ||||||||||  
seq2  GTTTACTCTTAGTGTAGCAC-TCTAGGACACAGTG--ATTTTAGTAGT--  1044

seq1  TTTGATAAGCAAGCTCCTTACCCAGTTAAAAAAAATAGGAAGAAAAAAAG  1100
       ||||| |||| ||| |||| ||||||||||||       ||| ||||||
seq2  ATTGAT-AGCAGGCTTCTTA-CCAGTTAAAAAA------TAGAGAAAAAG  1086

seq1  CATAAATAATTTATCCACTT  1120
      ||| ||||  ||||||||||
seq2  CAT-AATA--TTATCCACTT  1103


seq1: chr7_103149395_103149801
seq2: B6Ng01-309B04.g_67_473 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAATACCTGTGGTCATAGGCATCACACATACATGAACACACAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATACCTGTGGTCATAGGCATCACACATACATGAACACACAAACATA  100

seq1  TGCACATGCACAGACATACAATATTTAAAGCAAAGGTAGTCACTTGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCACAGACATACAATATTTAAAGCAAAGGTAGTCACTTGTGGC  150

seq1  CGCCATTAGGTATGACGTTGACACCAGCATGTTGGGGAGTCCTAGCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATTAGGTATGACGTTGACACCAGCATGTTGGGGAGTCCTAGCAGCA  200

seq1  TAAGATCCATGAATCCTAACAGCCATGTATAGTGGGAGTTGAGAACATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCATGAATCCTAACAGCCATGTATAGTGGGAGTTGAGAACATGA  250

seq1  GTCACATCAGAGTCAGGCAGGCTCAGATTCAGAATTCAAGTTAGATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCAGAGTCAGGCAGGCTCAGATTCAGAATTCAAGTTAGATAATT  300

seq1  TCCCATTGTGGGGTCCCAATAAATTATTAAGCTTTCAGCACAATGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGTGGGGTCCCAATAAATTATTAAGCTTTCAGCACAATGTTTTT  350

seq1  TCCCCCTCTACAGACCAGGGATAGCAGTGTTTCCAAACAAGCTTAATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCTACAGACCAGGGATAGCAGTGTTTCCAAACAAGCTTAATGTG  400

seq1  AGAATTC  407
      |||||||
seq2  AGAATTC  407


| Home | SequenceCutter | Blast | Download |