BAC Information

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BAC

Clone NameB6Ng01-311O07
Chromosome7 (Build37)3 (Build37)
Map Location 37,345,667 - 37,346,72829,400,341 - 29,401,219
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311O07.bB6Ng01-311O07.g
ACCGA103499GA103500
length1,076556
definitionB6Ng01-311O07.b B6Ng01-311O07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,345,667 - 37,346,728)(29,400,341 - 29,401,219)
sequence
gaattctcttcatgctcctctttcccttgttcatccaagcccaacagata
tatatctgttttacagggacacagtaattgttttggggggttgttttgtt
tgtttgttgggttttttcctcttttagatcatctctctactgcaaattgt
gtctccaacaggtgaaacctttaaaccctccaaaacttggtgttcatcac
catcatgtttctagtaacacgttatgcagagcctgggacagaacacatcc
tcagagactacatgatgccaagccatgcttcattccccgggacttaacct
ctgttgtagcatcgatgggaccagattatgcaggttggagttaccaagga
gcaaagtagactcaaatggcttgaggaaagactggtagccatgaacaggt
tgaagcaaatatttcagtattctgtgctgtccagtcaactcaaaggggca
aagacccaccaggggcagagcccatttacagggttaatcaaaaggcttgg
attatgggacattaagcagacaaatgaagtgtggtggtcagaaagggtga
caatggctcctcagagaagcagaccacgcatgtcaagattaatgtctcct
gaccactgaatctattcagggccttcctgtgttatatttctccttcctca
ttcatcttgactgcccacctaggtacggagaaaagccaggagctagctgg
ttgcacaaaatcaggcaacttctagaaaaccctttgggttcttcagatac
tgcctgtaacttgagctagcacattcaatcaaataactagctgggctggt
taattgataagaaaaaaaaaactcttagtatttgttgtttctatgtcctg
cctatggagtttgtgttaaaatggtgttgtcaaagatttaagatatgtat
tttgtgtacagaagcaccgattaccaacataatattggaaatgcccaggc
tctcagggtggctatttagtctctgtctgtatgtggcacagaggaggagc
tcctgaaaattcttccgtgggaatctatttagaactagttgtcttgctat
gaaaggaactgggtttccaggatcac
gaattccacccaaatcctcaactcttctcttttcagtttctttctctctg
tttttttttttttttttttttttttttttttttttttgaggggggatggt
tgctgaacatgaacagagggccgtgaacaggtgaggcaggtgctctacag
ctgaatcacaaataaatgttaaacagtgacatccctgcctctgatacaca
cacacacacacacacacacacacacacacacacacacacagagtctggaa
aaatggctcaatggttaaaaacactggctgttcttccaaaaaacttgggt
ttatttcacagcactcacatggcagctcacaaccatctttaactccagtt
cgaggaaactgaatgacctgtctggccttcttgggcagcagttgttgtaa
tggtgcacaaacacacatgtaggcaaaacatccatacacatgaaatttta
aaaattattgcatttgtttgtttatttaatctctctctctttctctctcg
cgcactctctctctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_37345667_37346728
seq2: B6Ng01-311O07.b_48_1123

seq1  GAATTCTCTTCATGCTCCTCTTTCCCTTGTTCATCCAAGCCCAACAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCATGCTCCTCTTTCCCTTGTTCATCCAAGCCCAACAGATA  50

seq1  TATATCTGTTTTACAGGGACACAGTAATTGTTTTGGGGGGTTGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTTTTACAGGGACACAGTAATTGTTTTGGGGGGTTGTTTTGTT  100

seq1  TGTTTGTTGGGTTTTTTCCTCTTTTAGATCATCTCTCTACTGCAAATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTGGGTTTTTTCCTCTTTTAGATCATCTCTCTACTGCAAATTGT  150

seq1  GTCTCCAACAGGTGAAACCTTTAAACCCTCCAAAACTTGGTGTTCATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAACAGGTGAAACCTTTAAACCCTCCAAAACTTGGTGTTCATCAC  200

seq1  CATCATGTTTCTAGTAACACGTTATGCAGAGCCTGGGACAGAACACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTTTCTAGTAACACGTTATGCAGAGCCTGGGACAGAACACATCC  250

seq1  TCAGAGACTACATGATGCCAAGCCATGCTTCATTCCCCGGGACTTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTACATGATGCCAAGCCATGCTTCATTCCCCGGGACTTAACCT  300

seq1  CTGTTGTAGCATCGATGGGACCAGATTATGCAGGTTGGAGTTACCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAGCATCGATGGGACCAGATTATGCAGGTTGGAGTTACCAAGGA  350

seq1  GCAAAGTAGACTCAAATGGCTTGAGGAAAGACTGGTAGCCATGAACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAGACTCAAATGGCTTGAGGAAAGACTGGTAGCCATGAACAGGT  400

seq1  TGAAGCAAATATTTCAGTATTCTGTGCTGTCCAGTCAACTCAAAGGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAATATTTCAGTATTCTGTGCTGTCCAGTCAACTCAAAGGGGCA  450

seq1  AAGACCCACCAGGGGCAGAGCCCATTTACAGGGTTAATCAAAAGGCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCACCAGGGGCAGAGCCCATTTACAGGGTTAATCAAAAGGCTTGG  500

seq1  ATTATGGGACATTAAGCAGACAAATGAAGTGTGGTGGTCAGAAAGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGGACATTAAGCAGACAAATGAAGTGTGGTGGTCAGAAAGGGTGA  550

seq1  CAATGGCTCCTCAGAGAAGCAGACCACGCATGTCAAGATTAATGTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTCCTCAGAGAAGCAGACCACGCATGTCAAGATTAATGTCTCCT  600

seq1  GACCACTGAATCTATTCAGGGCCTTCCTGTGTTATATTTCTCCTTCCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGAATCTATTCAGGGCCTTCCTGTGTTATATTTCTCCTTCCTCA  650

seq1  TTCATCTTGACTGCCCACCTAGGTACGGAGAAAAGCCAGGAGCTAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGACTGCCCACCTAGGTACGGAGAAAAGCCAGGAGCTAGCTGG  700

seq1  TTGCACAAAATCAGGCAACTTCTAGAAAACCCTTTGGGTTCTTCAGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAAATCAGGCAACTTCTAGAAAACCCTTTGGGTTCTTCAGATAC  750

seq1  TGCCTGTAACTTGAGCTAGCACATTCAATCAAATAACTAGCTGGGCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAACTTGAGCTAGCACATTCAATCAAATAACTAGCTGGGCTGGT  800

seq1  TAATTGATAAG-AAAAAAAAACTCTTAGTATTTGTTGTTTCTATGTCCTG  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAAGAAAAAAAAAACTCTTAGTATTTGTTGTTTCTATGTCCTG  850

seq1  CCTATGGAG-TTGTGTTAAAATGGTG-TGTCAAAGA-TTAAGATATGTA-  895
      ||||||||| |||||||||||||||| ||||||||| |||||||||||| 
seq2  CCTATGGAGTTTGTGTTAAAATGGTGTTGTCAAAGATTTAAGATATGTAT  900

seq1  TTTGTGTACAGAAGCA-CGATAACCAACAT-ATATAGGAAATGCCAGGGC  943
      |||||||||||||||| |||| |||||||| |||| |||||||||  |||
seq2  TTTGTGTACAGAAGCACCGATTACCAACATAATATTGGAAATGCCCAGGC  950

seq1  TCTCAGGGTGGCTA-TTAGTC-CTGTCTGTATGTGGGCACAGAGGAGGAG  991
      |||||||||||||| |||||| |||||||||||| |||||||||||||||
seq2  TCTCAGGGTGGCTATTTAGTCTCTGTCTGTATGT-GGCACAGAGGAGGAG  999

seq1  GCTCTG-AAATTCTTCCGTGGGATTC-ATTTAGA--CAGTTGTCTGGCTA  1037
         ||| |||||||||||||||| || |||||||   |||||||| ||||
seq2  CTCCTGAAAATTCTTCCGTGGGAATCTATTTAGAACTAGTTGTCTTGCTA  1049

seq1  -GAAAGGAGCT-GGTTTCACAGATCAC  1062
       ||||||| || ||||||   ||||||
seq2  TGAAAGGAACTGGGTTTCCAGGATCAC  1076

seq1: chr3_29400341_29401219
seq2: B6Ng01-311O07.g_260_622 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACACACACACACACACACACACACACACACACACACACAGAAAGAGAGAG  50

seq1  A----GAGAGAGAGATCAATGTTATATGTAAAGTAGACACTGAA---CAC  93
      |    | ||||||||  |  |  | |  | || || |||   ||   || 
seq2  AGTGCGCGAGAGAGA-AAGAGAGAGAGATTAAATAAACAAACAAATGCAA  99

seq1  TAAT-------ATTACATCTG-----------TGGCTAC-CATCTTCTTG  124
      ||||       ||| ||| ||           || ||||   | |  |||
seq2  TAATTTTTAAAATTTCATGTGTATGGATGTTTTGCCTACATGTGTGTTTG  149

seq1  TG----ATTCCA------GATCATTTAGGAAGCCAGCCAAGGGA--CGAT  162
      ||    ||| ||      | |     || | ||||| || |  |  |  |
seq2  TGCACCATTACAACAACTGCTGCCCAAGAAGGCCAGACAGGTCATTCAGT  199

seq1  TT--------TGGGATAATACATTGTGCTTCACTCTCTAGAGGCTCATGT  204
      ||        |||  | | | || ||  |   ||  |  | |  |  |||
seq2  TTCCTCGAACTGGAGTTAAAGATGGTTGTGAGCTGCCATGTGAGTGCTGT  249

seq1  GACTTAATAACCCACTGTTCCTCTTTCTTTCTTCCTTCTTTTCTCTCTCC  254
      ||   ||||| ||   |||                   ||||       |
seq2  GA---AATAAACCCAAGTT-------------------TTTTGGAAGAAC  277

seq1  CTCCCTCCCTTCCTCACTCTTCCCTTTCTCCCTTCCTCCTTCCTTCCTTT  304
        |           || | ||   |||  || ||   || |  ||||   
seq2  AGC-----------CAGTGTT---TTTAACCATTGAGCCATTTTTCCAGA  313

seq1  CTTCTTGCTTGCTTGCTTCCTTTCCTTCTTTTCTTTCT---TTTCTGAAT  351
      ||   ||  ||  ||  |   |   |   | | | | |   | | || ||
seq2  CTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  363

seq1  GCTAGAATGATTTGCTTTTGAGAACCTCACACATGGGTAATACATCTATG  401
                                                        
seq2  --------------------------------------------------  363

seq1  ACTTGCCTATCTCCTTCCTCCCCATCTATCTCTTCTAGTGTCCCACTCCA  451
                                                        
seq2  --------------------------------------------------  363

seq1  AAATCCATAACCTCGTCTTTAATCATTTTTGTTATATGTATTTATGTATA  501
                                                        
seq2  --------------------------------------------------  363

seq1  CACACACACATCTACCAAGTACATCTTGTGTTGCCAATATATAAATGGTC  551
                                                        
seq2  --------------------------------------------------  363

seq1  CATGACTGCCATTTTTGATTGGACAAACTCTGTGGGACCTATCACTAGAG  601
                                                        
seq2  --------------------------------------------------  363

seq1  GAGATTGATTCTCTGTCTCAGGAAAACTGATCACCTTTAGCTCCTAACAC  651
                                                        
seq2  --------------------------------------------------  363

seq1  TGTTCAGGGATGGAAATTTCTTGGTCACAATGATGACTCAAGTGATTTAT  701
                                                        
seq2  --------------------------------------------------  363

seq1  TCAATTTTATTAGTTATAAGTTATACTTTGTCTCCCTAATTTGTAAACTT  751
                                                        
seq2  --------------------------------------------------  363

seq1  CAAATGCTACTCTGAGTGAGAAAATTTTAATCAAAATGTCTGTTTTATAA  801
                                                        
seq2  --------------------------------------------------  363

seq1  AGTGATGTATATATATATATATATATATATATATATATATATATGTGTGT  851
                                                        
seq2  --------------------------------------------------  363

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTAT  879
                                  
seq2  ----------------------------  363