BAC Information

Click to search

BAC

Clone NameB6Ng01-313N15
Chromosome7 (Build37)
Map Location 7,795,591 - 7,796,730
singlet/doubletsinglet
Overlap geneVmn2r-ps40
Upstream geneUsp29, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353
Downstream geneVmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313N15.bB6Ng01-313N15.g
ACCGA104948GA104949
length1,2151,121
definitionB6Ng01-313N15.b B6Ng01-313N15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgaaccccatttttaatggtgttatttgattt
tctggagtccacgttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtgttattgacagtgtcttttgccttactgaagctttcaattttatg
aggtcccaattgtcgagtctccatattacatcacaagccattgcggttct
attcagggatttttttcccctgtgcccatatctttgaggcttttcccaac
tttctcctctataagtttcggtgtctctggttttatgtggagttcctaaa
tccacttagatttgaccttagtataaggggataggaatggatcagttcac
attcttttcatgataaccgcaaattgtgccagcaccatttgttgaaaatg
ctgtctattttccactggatggttttagctcccttgtcaaagatcaagtg
accatagttgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcgatataccagaaccatgcaatttttatcacaattact
ctctagtacagctttaggtcaggcatggtgattccaccagaggttctttt
attcttgagaagactttttgctatcctaggttttttgttattccagatga
atttgcagattgccctttccaattcattgaagaattgagttggaattttg
aggggattgcattgaatctgaagattgctttttactatattgatcctgcc
aatcaatgaacatgggagatctttccatcttctgaaatcttttttaattt
ctttctacagtgacttgaagttcttatcatacagatctttcacttcctta
gttagagtcatgccacggtattttatattatttgtgactattgagaaggc
tgtgttttccctaatttctttctcagcctgtttatccttgtgtagagaaa
gtccattgacatgtttgagttattttattatcacaatactcattaaacct
gtttattatgttttagagttttctggtggatttaggtccacttatatata
ctattcatattcatctgccaaagggatattttgacttcctccttgccaat
tcgatccctaagcccttttttgccaatgcctctggcctagagaacctctc
aagtacaacagatgt
gaattcctaaatatttgttcagaaatatgatttttccctgatcttttggg
tagaatttctctctggtctcattaaaatgatataaatcttgggtacaaaa
atacatccaaggatccctgcactggatgccaagatggagaagatctccac
agcaaccatgtgtttgcccttggtgctatggtagacagggaggaagttga
cccagacactgcagaacactagcatgctgaaggtcaagaacttggcttca
ttgaatgtgtcaggcagattcttggccaagaaagccagagagaagcttcc
aagtgccaggcaggccaaatatcccaggatacagtagaatgcagtaactg
agcccttgtagaacacaatgatgatgtggccatggagagtgtgttcatca
atatcaacaaagggaggagaaactgctagccagattgcacacagaacaca
ttggagtagggaacatatgggaataatgtagttgggtgtccctgatacca
gaaagtttctcaatcttcttcctgggtctgtgactttgaaagcaagaacc
acagtgactgttttggccagaactttggaaacagccacagtgaatacaat
tccaaatgtgatttgttgtaagacacaggtggctctgttaggatgaccaa
tgaagaaaaaagagcacagaaaacaggacatgagtgatatcaataatatg
tagctgaggattctgttattgtcttcacaataggagtgtcatgatgcttc
acaaagacacaaagtaccacagctgtgaatgcagagaaacagaaggccat
taagggccagtgccatccccaaagggtcttcatagcttaggaaggtgaca
cctttctgaatacatttgttctgttatgtattggcatattggtattctgg
acaattcacacattgatccatatctgattccaaaggaaagcttagttagg
tctaattacaaattttattgacaggtatttcagtagggtaatgagagagc
ttgaaatgctgcttgatgctgagcatgtatgtgaagaatatgtgctggca
ttgccttccatcataatatcataagatttaaccgtaaataaagcagccaa
tttttcttgtctagtacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7795591_7796730
seq2: B6Ng01-313N15.g_67_1187

seq1  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATATTTGTTCAGAAATATGATTTTTCCCTGATCTTTTGGG  50

seq1  TAGAATTTCTCTCTGGTCTCATTAAAATGATATAAATCTTGGGTACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTCTCTGGTCTCATTAAAATGATATAAATCTTGGGTACAAAA  100

seq1  ATACATCCAAGGATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCAAGGATCCCTGCACTGGATGCCAAGATGGAGAAGATCTCCAC  150

seq1  AGCAACCATGTGTTTGCCCTTGGTGCTATGGTAGACAGGGAGGAAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATGTGTTTGCCCTTGGTGCTATGGTAGACAGGGAGGAAGTTGA  200

seq1  CCCAGACACTGCAGAACACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACTGCAGAACACTAGCATGCTGAAGGTCAAGAACTTGGCTTCA  250

seq1  TTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCAGAGAGAAGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTGTCAGGCAGATTCTTGGCCAAGAAAGCCAGAGAGAAGCTTCC  300

seq1  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGGCAGGCCAAATATCCCAGGATACAGTAGAATGCAGTAACTG  350

seq1  AGCCCTTGTAGAACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTGTAGAACACAATGATGATGTGGCCATGGAGAGTGTGTTCATCA  400

seq1  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACAAAGGGAGGAGAAACTGCTAGCCAGATTGCACACAGAACACA  450

seq1  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTAGGGAACATATGGGAATAATGTAGTTGGGTGTCCCTGATACCA  500

seq1  GAAAGTTTCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCAAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCTCAATCTTCTTCCTGGGTCTGTGACTTTGAAAGCAAGAACC  550

seq1  ACAGTGACTGTTTTGGCCAGAACTTTGGAAACAGCCACAGTGAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTGTTTTGGCCAGAACTTTGGAAACAGCCACAGTGAATACAAT  600

seq1  TCCAAATGTGATTTGTTGTAAGACACAGGTGGCTCTGTTAGGATGACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTGATTTGTTGTAAGACACAGGTGGCTCTGTTAGGATGACCAA  650

seq1  TGAAGAAAAAAGAGCACAGAAAACAGGACATGAGTGATATCAATAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAAAGAGCACAGAAAACAGGACATGAGTGATATCAATAATATG  700

seq1  TAGCTGAGGATTCTGTTATTGTCTTCACAATAGGAGTGTCATGATGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGATTCTGTTATTGTCTTCACAATAGGAGTGTCATGATGCTTC  750

seq1  ACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAACAGAAGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACACAAAGTACCACAGCTGTGAATGCAGAGAAACAGAAGGCCAT  800

seq1  TAA-GGCCAGTGCCATCCCCAAAGGGTCTTCATAGCTTAGGAAGGTGACA  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCAGTGCCATCCCCAAAGGGTCTTCATAGCTTAGGAAGGTGACA  850

seq1  CCTTTCTGAATACATTTGTTCTGTTATGTATTGGCATATTGGTATTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGAATACATTTGTTCTGTTATGTATTGGCATATTGGTATTCTGG  900

seq1  ACAATTCACACATTGATCCATATCTGATTTCCAAAGGAAAGCTTAGTTAG  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAATTCACACATTGATCCATATCTGA-TTCCAAAGGAAAGCTTAGTTAG  949

seq1  GTCTTAATTACAAATTTTATTGACAAGGTATTTCAAGTAAGGGTAATGAG  999
      ||| |||||||||||||||||||| ||||||||| ||| |||||||||||
seq2  GTC-TAATTACAAATTTTATTGAC-AGGTATTTC-AGT-AGGGTAATGAG  995

seq1  AGAAGCCTTGAAATGCTGCCTTTGATGCTGAGCATGTAATGTGAAGGATA  1049
      |||   |||||||||||||  |||||||||||||||| |||||||| |||
seq2  AGA--GCTTGAAATGCTGC--TTGATGCTGAGCATGT-ATGTGAAGAATA  1040

seq1  TTGTTGCTGAGCATTGCTTTCAATCCATAATATTCATAAAGATTTAA-CG  1098
      |   ||||| ||||||| ||| || ||||||| |||| ||||||||| ||
seq2  T--GTGCTG-GCATTGCCTTCCAT-CATAATA-TCAT-AAGATTTAACCG  1084

seq1  GAAATAAAACCAAGCAATTTTTTCTTTGTCTAGTTAACATTT  1140
       ||||||| |  ||| | |||||| |||||||||  ||||||
seq2  TAAATAAAGC--AGCCAATTTTTC-TTGTCTAGT--ACATTT  1121