BAC Information

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BAC

Clone NameB6Ng01-314F19
Chromosome7 (Build37)
Map Location 19,574,319 - 19,745,828
singlet/doubletdoublet
Overlap geneP42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2
Downstream geneEml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314F19.bB6Ng01-314F19.g
ACCGA105318GA105319
length1,133572
definitionB6Ng01-314F19.b B6Ng01-314F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,574,319 - 19,575,452)(19,745,257 - 19,745,828)
sequence
gaattccattggccaagttagtgggcgggtgcctttgggtgctgggagag
agagcacaagagggaactgaagggccgcctaaaaccctgggaaccgtaag
aggggcaggagggggtccagaactgccgcccagacctatctcatattgtc
ttccaacacaagtcgtctgactgggaacaggttcccaaataattctcagc
ctccacctagacacttttaaaattaaaaatagaggaaaaaaaagtgtgga
aaggcaagttgtgggtgtatgcctttaattctagcattcgggaggcagag
acaggtagatctctcttatcaattcaaggccagcctagtctacagagttg
caggacagtcagggctacacagagaaaccctgtcttaaaaagagggagga
gggctggagagagggggtacaacatccagacaatagtcaaataattcaag
ggagtccactttctaccacgtggggactgaactcaggtcacaagcttagt
ggcaagcgcctttcacccattgggccatctcaacagtcccttgagtcctc
cctccctccctcccttctcttttttttcctctttaccggagattgaacct
agggctctatagttctggtcacccatgggttcccttccatcttgtgagac
taggaactactaggtctgagttttgatagattttaaactttgggctccct
atcacaaaacggttaggggaaaaaaaagtataagccagcatcggggagta
gcagcacccctttaatcccagaactccagagtcagaagcaggtggaccca
gctgcaagatcctctcaaccacggcaccagcacccacatgcatatacata
attaaaacccaatcttaggccggtggtagtgtggctggcctttaataagt
ccccaaactcttgaggcaggccgatctcagtgatttcgggtcatccttcc
accacagcgctagtttccaggaacaatcaaaggtttacaaaaacaacaac
aaaaaaccccgtatctcaaaaacaaaaaggagcgactacacacatccaca
caaaaggaaaaaaaaaagaaaagaaattttctccatttatggtaatatga
gtgttttgctgcttgttgtttgtcccaccatgt
gaattccgcgggtcttgggcctggaaggggctcgtgtgcacactgacagc
tgcggcgtggtggggggcggggatcggggtctgcacaggggcccccgcgc
ttttcgtcattccctgggtgatcgtcaggtacctgcgcgagaacacacag
tgagttgcagggtctggggggcggggccgggctgggggcggggctacatg
gcacaggaggcggggaagggtggaaaagaggtggtgcgcagagggtgggc
ggggtataaaggaattatgggctgggaaaggtggaggagtaggagacttt
ctgaaaagcaggatgggatgggtcttaaatgaatgtaggtgggctttaaa
gagggtgggcaggccctggtgagagaacgtgcctgattagggggtaactg
gaggtttgccggggcatttctcgtctcagttctactttgcctcctctagg
tgctgggagcccaaccaagtcaaagccatttggcggatcattcgcacatt
catcctaataaccgtcttgataaggacagtttcttctcctccaggctgca
ctcttggattactcattctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19574319_19575452
seq2: B6Ng01-314F19.b_46_1178

seq1  GAATTCCATTGGCCAAGTTAGTGGGCGGGTGCCTTTGGGTGCTGGGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGGCCAAGTTAGTGGGCGGGTGCCTTTGGGTGCTGGGAGAG  50

seq1  AGAGCACAAGAGGGAACTGAAGGGCCGCCTAAAACCCTGGGAACCGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAAGAGGGAACTGAAGGGCCGCCTAAAACCCTGGGAACCGTAAG  100

seq1  AGGGGCAGGAGGGGGTCCAGAACTGCCGCCCAGACCTATCTCATATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGAGGGGGTCCAGAACTGCCGCCCAGACCTATCTCATATTGTC  150

seq1  TTCCAACACAAGTCGTCTGACTGGGAACAGGTTCCCAAATAATTCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACACAAGTCGTCTGACTGGGAACAGGTTCCCAAATAATTCTCAGC  200

seq1  CTCCACCTAGACACTTTTAAAATTAAAAATAGAGGAAAAAAAAGTGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTAGACACTTTTAAAATTAAAAATAGAGGAAAAAAAAGTGTGGA  250

seq1  AAGGCAAGTTGTGGGTGTATGCCTTTAATTCTAGCATTCGGGAGGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGTTGTGGGTGTATGCCTTTAATTCTAGCATTCGGGAGGCAGAG  300

seq1  ACAGGTAGATCTCTCTTATCAATTCAAGGCCAGCCTAGTCTACAGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGATCTCTCTTATCAATTCAAGGCCAGCCTAGTCTACAGAGTTG  350

seq1  CAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTTAAAAAGAGGGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTCAGGGCTACACAGAGAAACCCTGTCTTAAAAAGAGGGAGGA  400

seq1  GGGCTGGAGAGAGGGGGTACAACATCCAGACAATAGTCAAATAATTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGAGAGGGGGTACAACATCCAGACAATAGTCAAATAATTCAAG  450

seq1  GGAGTCCACTTTCTACCACGTGGGGACTGAACTCAGGTCACAAGCTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCACTTTCTACCACGTGGGGACTGAACTCAGGTCACAAGCTTAGT  500

seq1  GGCAAGCGCCTTTCACCCATTGGGCCATCTCAACAGTCCCTTGAGTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCGCCTTTCACCCATTGGGCCATCTCAACAGTCCCTTGAGTCCTC  550

seq1  CCTCCCTCCCTCCCTTCTCTTTTTTTTCCTCTTTACCGGAGATTGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTTCTCTTTTTTTTCCTCTTTACCGGAGATTGAACCT  600

seq1  AGGGCTCTATAGTTCTGGTCACCCATGGGTTCCCTTCCATCTTGTGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTATAGTTCTGGTCACCCATGGGTTCCCTTCCATCTTGTGAGAC  650

seq1  TAGGAACTACTAGGTCTGAGTTTTGATAGATTTTAAACTTTGGGCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTACTAGGTCTGAGTTTTGATAGATTTTAAACTTTGGGCTCCCT  700

seq1  ATCACAAAACGGTTAGGGGAAAAAAAAGTATAAGCCAGCATCGGGGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAACGGTTAGGGGAAAAAAAAGTATAAGCCAGCATCGGGGAGTA  750

seq1  GCAGCACCCCTTTAATCCCAGAACTCCAGAGTCAGAAGCAGGTGGACCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCCCTTTAATCCCAGAACTCCAGAGTCAGAAGCAGGTGGACCCA  800

seq1  GCTGCAAGATCCTCTCAACCACGGCACCAGCACCCACATGCATATACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAGATCCTCTCAACCACGGCACCAGCACCCACATGCATATACATA  850

seq1  ATTAAAACCCAATCTTAGGCCGGTGGTAGTGTGGCTGGCCTTTAATAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACCCAATCTTAGGCCGGTGGTAGTGTGGCTGGCCTTTAATAAGT  900

seq1  CCCCAAACTCTTGAGGCAGGCCGATCTCAGTGATTTCGGGGTCATCC-TC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CCCCAAACTCTTGAGGCAGGCCGATCTCAGTGATTTC-GGGTCATCCTTC  949

seq1  CACCACAGCGCTAG-TTCCAGG-ACAATCAA--GGTTACAAAAACAAACA  995
      |||||||||||||| ||||||| ||||||||  | ||||||||||||   
seq2  CACCACAGCGCTAGTTTCCAGGAACAATCAAAGGTTTACAAAAACAA--C  997

seq1  AACAAAAAACCCCGTATCTCAAAAACAAAAAGGAACCAACCACACACACC  1045
      ||||||||||||||||||||||||||||||||| | | || ||||||| |
seq2  AACAAAAAACCCCGTATCTCAAAAACAAAAAGG-AGCGACTACACACATC  1046

seq1  CACACCAAAAAGAAAAAAAAAAGAAAAAGAAATTTTCTCCCTTTTATGT-  1094
      |||| ||||| |||||||||||| |||||||||||||||| |||   || 
seq2  CACA-CAAAAGGAAAAAAAAAAG-AAAAGAAATTTTCTCCATTTATGGTA  1094

seq1  ATATGAGTGTTTTGCCTGCTTGTATGTTTGT-CCACCATGT  1134
      |||||||||||||| |||||||| ||||||| |||||||||
seq2  ATATGAGTGTTTTG-CTGCTTGT-TGTTTGTCCCACCATGT  1133

seq1: chr7_19745257_19745828
seq2: B6Ng01-314F19.g_61_632 (reverse)

seq1  CCCAGAATGAGAAATCCCTGAGTACAGCCTGGAGGAGGCGAGACTGGCCC  50
      ||||||||||| |||||  |||| |||||||||||||  || |||| || 
seq2  CCCAGAATGAGTAATCCAAGAGTGCAGCCTGGAGGAGAAGAAACTGTCCT  50

seq1  TACCAAGATGGTTATTAGGATGGGAGTGCGAATGATCCACCAAATGGCTT  100
      || ||||| |||||||||||||   ||||||||||||| |||||||||||
seq2  TATCAAGACGGTTATTAGGATGAATGTGCGAATGATCCGCCAAATGGCTT  100

seq1  TGACTTCGTTGCGCTCCCAGCACCTAGAGGAGGCAAAGTAGAACTGAGAC  150
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGTTGGGCTCCCAGCACCTAGAGGAGGCAAAGTAGAACTGAGAC  150

seq1  GCGAAATGCCCCGGCAAACCTCCAGTTACCCCCTAATCAGGCACGTTCTC  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCCCCGGCAAACCTCCAGTTACCCCCTAATCAGGCACGTTCTC  200

seq1  TCACCAGGGCCTGCCCACCCTCTTTAAAGCCCACCTACATTCATTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGGCCTGCCCACCCTCTTTAAAGCCCACCTACATTCATTTAAGA  250

seq1  CCCATCCCATCCTGCTTTTCAGAAAGTCTCCTACTCCTCCACCTTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCATCCTGCTTTTCAGAAAGTCTCCTACTCCTCCACCTTTCCCA  300

seq1  GCCCATAATTCCTTTATACCCCGCCCACCCTCTGCGCACCACCTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAATTCCTTTATACCCCGCCCACCCTCTGCGCACCACCTCTTTTC  350

seq1  CACCCTTCCCCGCCTCCTGTGCCATGTAGCCCCGCCCCCAGCCCGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTCCCCGCCTCCTGTGCCATGTAGCCCCGCCCCCAGCCCGGCCCC  400

seq1  GCCCCCCAGACCCTGCAACTCACTGTGTGTTCTCGCGCAGGTACCTGACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCAGACCCTGCAACTCACTGTGTGTTCTCGCGCAGGTACCTGACG  450

seq1  ATCACCCAGGGAATGACGAAAAGCGCGGGGGCCCCTGTGCAGACCCCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCAGGGAATGACGAAAAGCGCGGGGGCCCCTGTGCAGACCCCGAT  500

seq1  CCCCGCCCCCCACCACGCCGCAGCTGTCAGTGTGCACACGAGCCCCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCCCCCACCACGCCGCAGCTGTCAGTGTGCACACGAGCCCCTTCC  550

seq1  AGGCCCAAGACCCGCGGAATTC  572
      ||||||||||||||||||||||
seq2  AGGCCCAAGACCCGCGGAATTC  572