BAC Information

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BAC

Clone NameB6Ng01-319D15
Chromosome7 (Build37)
Map Location 27,168,837 - 27,402,371
singlet/doubletdoublet
Overlap geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12
Upstream geneLipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4
Downstream geneEG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319D15.bB6Ng01-319D15.g
ACCGA108913GA108914
length1,1741,003
definitionB6Ng01-319D15.b B6Ng01-319D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,168,837 - 27,170,000)(27,401,372 - 27,402,371)
sequence
gaattcttctttgtataaatggaggaacttaacacatgcagcgccacaca
gctccaaacaccagtatcaaggctcaataggaagcctttctgactatacc
atctaaacaagcatagacaagtaatagatttaccatgctggagagagggc
taagtgggtaagtatatttgttgtgcaagcaagagaacttgaggtcagat
tcacagtactgacataaaaagatggacatggttgcttgaggctgttgccc
agcattagaagatggaaacaggtagctcctgctatcttactggttagttt
gccttgtcaagatgattagagactgttccaaggtattaaggcaaagaaca
atagagaaagatacccatgtcttcctctggcttcatcatgaatttgcatg
gacacatctataaaatatttctctggatagtaaggcagaagaaaagacaa
ggacagtggacaaggcttagagacatactcacttttggtccagtttaaag
ttttctaagctaccatattcgggatcatggatttctgaaaaaactttctt
ttgtatatgcaggtgaaggtttttcaattttgaggctcgcagcagactgt
attcagctgctcccaaatcatcactatcactaatatcaacagtaatttct
tcaaatagattcatcacttgacttacaaatctttcctcctggttttcaat
tagacagaagaacaacttcttgggatgcaccagtttctcattacactctg
gttgactgagacttttaaggtatctaatgatttcctgtcttattgttttg
aatgatatattgccaaagcatggtttaagcaaagtgatcacatgtttagt
ggcaattccaaagaaaaatgtctgtgcatgggtccattggtttctgttta
tgagcatatatttctcctaaaagttgaggtaggcttccaataactgggtg
atatgtgtctttgtcctgtttgagaaaaatagaacagggtagcaagtacc
actgtagtgtagaatggtaaaacataatgtgttaccttggattgcagaaa
attcattttcagccaccactgtctatcagattcagaatatctttatttcc
tccttggagtcctcagagtcaacacaattatactggtttcgcaattccct
cttacagtccaaagggtgtgcaca
gaattcatctgtacttatccttttcacctcaatgaaagtggtgcatattt
ctggggacattaaacaccaaatctatcctgtgcttgtgaaatggaactgg
gaggtgagacagtttttgtttgtttgttttaaaaacaggtcagatttaga
atactgcattttagtaaaatcatatttaaatttgtcttttgccctttaaa
taatcctttacttcaaaatgaaaactttttttgaaaagatttttttatta
tctattttgattttatgtgcaggaatgatttgcctacatgcatgtatgtg
cactctgtgaatgcactgccttcaaagaacagaagagagtgtgtgaatgt
cctggaactggaattacaggaagttttggggtgttgggagcaaagctcag
gtcctctgcaacagcagcaagtggactttacaatttaatcatcattctag
tccccccaaatgaaaacttcctaccgccaaaagtatacagtaaacaaaat
atcaggtagagaagccaaactgcatagaaagcagaatatgtaatagacca
actcgtacggctttgtgattagagactgaggttcctgtgttttcagcaca
caagccaagtacaagaccttccaggagctactttgaaataatgagttttt
ggatttccagaggtactttccctttttgtttataattgtacgtcttgaca
gttgaaaccactgtccacatcagacagttataaacattaaagaggtattt
atttattatgtatttatttattataaggatagtattgactcataaattct
taccactgtagactcctttacatttaatttataaaaaaattcattttcca
ttttcttttaaggttctggatgcaatgagtatagtagaagcagtagaaaa
taaaatttaagtctaacttgtaatccataggaacaaaaaaaactaatatt
aaattatggagatggggattgttatcatggcgtagaccagaatacatgaa
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27168837_27170000
seq2: B6Ng01-319D15.b_46_1219

seq1  GAATTCTTCTTTGTATAAATGGAGGAACTTAACACATGCAGCGCCACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTGTATAAATGGAGGAACTTAACACATGCAGCGCCACACA  50

seq1  GCTCCAAACACCAGTATCAAGGCTCAATAGGAAGCCTTTCTGACTATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAACACCAGTATCAAGGCTCAATAGGAAGCCTTTCTGACTATACC  100

seq1  ATCTAAACAAGCATAGACAAGTAATAGATTTACCATGCTGGAGAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAAGCATAGACAAGTAATAGATTTACCATGCTGGAGAGAGGGC  150

seq1  TAAGTGGGTAAGTATATTTGTTGTGCAAGCAAGAGAACTTGAGGTCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGTAAGTATATTTGTTGTGCAAGCAAGAGAACTTGAGGTCAGAT  200

seq1  TCACAGTACTGACATAAAAAGATGGACATGGTTGCTTGAGGCTGTTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTACTGACATAAAAAGATGGACATGGTTGCTTGAGGCTGTTGCCC  250

seq1  AGCATTAGAAGATGGAAACAGGTAGCTCCTGCTATCTTACTGGTTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGAAGATGGAAACAGGTAGCTCCTGCTATCTTACTGGTTAGTTT  300

seq1  GCCTTGTCAAGATGATTAGAGACTGTTCCAAGGTATTAAGGCAAAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCAAGATGATTAGAGACTGTTCCAAGGTATTAAGGCAAAGAACA  350

seq1  ATAGAGAAAGATACCCATGTCTTCCTCTGGCTTCATCATGAATTTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAGATACCCATGTCTTCCTCTGGCTTCATCATGAATTTGCATG  400

seq1  GACACATCTATAAAATATTTCTCTGGATAGTAAGGCAGAAGAAAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCTATAAAATATTTCTCTGGATAGTAAGGCAGAAGAAAAGACAA  450

seq1  GGACAGTGGACAAGGCTTAGAGACATACTCACTTTTGGTCCAGTTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGGACAAGGCTTAGAGACATACTCACTTTTGGTCCAGTTTAAAG  500

seq1  TTTTCTAAGCTACCATATTCGGGATCATGGATTTCTGAAAAAACTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGCTACCATATTCGGGATCATGGATTTCTGAAAAAACTTTCTT  550

seq1  TTGTATATGCAGGTGAAGGTTTTTCAATTTTGAGGCTCGCAGCAGACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATGCAGGTGAAGGTTTTTCAATTTTGAGGCTCGCAGCAGACTGT  600

seq1  ATTCAGCTGCTCCCAAATCATCACTATCACTAATATCAACAGTAATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTGCTCCCAAATCATCACTATCACTAATATCAACAGTAATTTCT  650

seq1  TCAAATAGATTCATCACTTGACTTACAAATCTTTCCTCCTGGTTTTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGATTCATCACTTGACTTACAAATCTTTCCTCCTGGTTTTCAAT  700

seq1  TAGACAGAAGAACAACTTCTTGGGATGCACCAGTTTCTCATTACACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAAGAACAACTTCTTGGGATGCACCAGTTTCTCATTACACTCTG  750

seq1  GTTGACTGAGACTTTTAAGGTATCTAATGATTTCCTGTCTTATTGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTGAGACTTTTAAGGTATCTAATGATTTCCTGTCTTATTGTTTTG  800

seq1  AATGATATATTGCCAAAGCATGGTTTAAGCAAAGTGATCACATGTTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATATTGCCAAAGCATGGTTTAAGCAAAGTGATCACATGTTTAGT  850

seq1  GGCAATTCCAAAGAAAAATGTCTGTGCATGGGTCCATTGG-TTCTGTTTA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCAATTCCAAAGAAAAATGTCTGTGCATGGGTCCATTGGTTTCTGTTTA  900

seq1  TGAGCATATATTTCTCCTAAAAGTTGAGGTAGGCTTCCAATAACTGGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATATATTTCTCCTAAAAGTTGAGGTAGGCTTCCAATAACTGGGTG  950

seq1  ATATGTGTCTTTGTCCTGTTTGAG-AAAATAGAACAGGGTAGCAAAGTAC  998
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ATATGTGTCTTTGTCCTGTTTGAGAAAAATAGAACAGGGTAGC-AAGTAC  999

seq1  CACTGTAGTGTAGAATGGTAAAACATAATGTTGTTACCTTGAATTTGCAG  1048
      |||||||||||||||||||||||||||||| |||||||||| | ||||||
seq2  CACTGTAGTGTAGAATGGTAAAACATAATG-TGTTACCTTGGA-TTGCAG  1047

seq1  AAATTTCATTTTCAGCCA-CACTGTCTTATCAGATTCAG-ATATCTT--A  1094
      ||| |||||||||||||| ||||||| |||||||||||| |||||||   
seq2  AAAATTCATTTTCAGCCACCACTGTC-TATCAGATTCAGAATATCTTTAT  1096

seq1  TTCCTCC-TGAGGTCCTCAGAGTCAA-ACACATATACCTGTTTCCACATT  1142
      ||||||| ||  |||||||||||||| |||  |||||  |||||   |||
seq2  TTCCTCCTTGGAGTCCTCAGAGTCAACACAATTATACTGGTTTCGCAATT  1146

seq1  CCCTC-TACAG-CCAA----GGTGCACA  1164
      ||||| ||||| ||||     |||||||
seq2  CCCTCTTACAGTCCAAAGGGTGTGCACA  1174

seq1: chr7_27401372_27402371
seq2: B6Ng01-319D15.g_65_1067 (reverse)

seq1  ATTTTCATTGTATCTTGTCCTACGCCATGATAAC-ATCCCCATCTCCAT-  48
      ||||||| |||||  ||  ||||||||||||||| |||||||||||||| 
seq2  ATTTTCA-TGTATTCTGGTCTACGCCATGATAACAATCCCCATCTCCATA  49

seq1  ATTTAATATTAGTTTTTTTTGTTCCTATGGATTACAAGTTAGACTT-AAT  97
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTAATATTAGTTTTTTTTGTTCCTATGGATTACAAGTTAGACTTAAAT  99

seq1  TTTATTTTCTACTGCTTCTACTATACTCATTGCATCCAGAACCTTAAAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTACTGCTTCTACTATACTCATTGCATCCAGAACCTTAAAAG  149

seq1  -AAATGGAAAATGAATTTTTTTATTAATTAAATGTAAAGGAGTCTACAGT  196
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAATGGAAAATGAATTTTTTTATAAATTAAATGTAAAGGAGTCTACAGT  199

seq1  GGTAAGAATTTATGAGTCAATACTATCCTTATAATAAATAAATACATAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAATTTATGAGTCAATACTATCCTTATAATAAATAAATACATAAT  249

seq1  AAATAAATACCTCTTTAATGTTTATAACTGTCTGATGTGGACAGTGGTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACCTCTTTAATGTTTATAACTGTCTGATGTGGACAGTGGTTT  299

seq1  CAACTGTCAAGACGTACAATTATAAACAAAAAGGGAAAGTACCTCTGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCAAGACGTACAATTATAAACAAAAAGGGAAAGTACCTCTGGAA  349

seq1  ATCCAAAAACTCATTATTTCAAAGTAGCTCCTGGAAGGTCTTGTACTTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAACTCATTATTTCAAAGTAGCTCCTGGAAGGTCTTGTACTTGG  399

seq1  CTTGTGTGCTGAAAACACAGGAACCTCAGTCTCTAATCACAAAGCCGTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGCTGAAAACACAGGAACCTCAGTCTCTAATCACAAAGCCGTAC  449

seq1  GAGTTGGTCTATTACATATTCTGCTTTCTATGCAGTTTGGCTTCTCTACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTCTATTACATATTCTGCTTTCTATGCAGTTTGGCTTCTCTACC  499

seq1  TGATATTTTGTTTACTGTATACTTTTGGCGGTAGGAAGTTTTCATTTGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTGTTTACTGTATACTTTTGGCGGTAGGAAGTTTTCATTTGGG  549

seq1  GGGACTAGAATGATGATTAAATTGTAAAGTCCACTTGCTGCTGTTGCAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGAATGATGATTAAATTGTAAAGTCCACTTGCTGCTGTTGCAGA  599

seq1  GGACCTGAGCTTTGCTCCCAACACCCCAAAACTTCCTGTAATTCCAGTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGCTTTGCTCCCAACACCCCAAAACTTCCTGTAATTCCAGTTC  649

seq1  CAGGACATTCACACACTCTCTTCTGTTCTTTGAAGGCAGTGCATTCACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTCACACACTCTCTTCTGTTCTTTGAAGGCAGTGCATTCACAG  699

seq1  AGTGCACATACATGCATGTAGGCAAATCATTCCTGCACATAAAATCAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACATACATGCATGTAGGCAAATCATTCCTGCACATAAAATCAAAA  749

seq1  TAGATAATAAAAAAATCTTTTCAAAAAAAGTTTTCATTTTGAAGTAAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATAAAAAAATCTTTTCAAAAAAAGTTTTCATTTTGAAGTAAAGG  799

seq1  ATTATTTAAAGGGCAAAAGACAAATTTAAATATGATTTTACTAAAATGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAAGGGCAAAAGACAAATTTAAATATGATTTTACTAAAATGCA  849

seq1  GTATTCTAAATCTGACCTGTTTTTAAAACAAACAAACAAAAACTGTCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAAATCTGACCTGTTTTTAAAACAAACAAACAAAAACTGTCTCA  899

seq1  CCTCCCAGTTCCATTTCACAAGCACAGGATAGATTTGGTGTTTAATGTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGTTCCATTTCACAAGCACAGGATAGATTTGGTGTTTAATGTCC  949

seq1  CCAGAAATATGCACCACTTTCATTGAGGTGAAAAGGATAAGTACAGATGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATATGCACCACTTTCATTGAGGTGAAAAGGATAAGTACAGATGA  999

seq1  ATTC  1000
      ||||
seq2  ATTC  1003