BAC Information

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BAC

Clone NameB6Ng01-320D22
Chromosome7 (Build37)
Map Location 105,856,231 - 105,959,481
singlet/doubletdoublet
Overlap genePrkrir
Upstream geneClns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769
Downstream geneWnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320D22.bB6Ng01-320D22.g
ACCGA109664GA109665
length1,100699
definitionB6Ng01-320D22.b B6Ng01-320D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,856,231 - 105,857,521)(105,958,791 - 105,959,481)
sequence
gaattctgttattactatgattcataaaagccagtgccaggcagatttga
ttgacatgtatgaaccactatagaaactaataaggaagagctttgtaaat
ccttagtgttcttactttagtataactaacattttatgttaggtttggta
tagaaataaacttaaaggtacactatatattactgtgcagcaatttattt
taatattttttttcagatgcattttgcagaggcatcagaaaactaaagaa
tgattgggttattttatttctcaatattaattgaagcagatacttgtgaa
gtcattgggaggtgagccaattctggttcaacaatttaatcacaaatact
tgagggatttttttatttttttatttttttgccttgttttattacaagtc
taatactcttcagtccaaaagtctcatatgtgtaaaaggcaaactacttt
tgtgttcttgacattcagtaaaaatatcacaaatcattttaaaatataca
agccttgctttttattttagtatagtaaatatctcttaattttattgaga
gataatttcaatgagattaatttgaaattttaagatatagctcactattg
tagctgactttattcagcgtatatatcagaaagattagctagttttgttt
ttcccaaaagattctttcatcttatataaattaacccaaatgtgggaaaa
ttttttttctaaatgtgtagaacaagcagatgttgaaagccagcttgtac
gataattgtattaaaatatgtaagccctttggcttcattagtttggcatt
taagatcttgttaacatacatgagtagttctgccaaaaccacaattttta
ttatctttgatgctagagtaagatcagtgttgttcctttaaattgccaaa
gagtaaaccttggtatggagttaaaattgttcatgtgagttagatacatc
ttttgacatatgtatttatacattaatatagaatgtcccagttttcattc
acagtctagtttttcttatctttgctttgactgctagattaaatttttaa
ttgtttagatatctatccctcccctcatcacccagcttttgatggtgact

gaattctcttggtgtggaggctagaccccatccttcaagggatgcaggat
gaggaagcacagaccatgaaggctaagagagttgggtgtgggtctgggtg
tcccaggtttccagccacacccgccagccaaactggacaagacaaccaca
agacagctggcctggctgctggtgctgcttggggggaggagatgcaagag
cagccatgggtggcatgagtagccattctgggcggaagaaccagctgatg
atccaagagtgtggagggatccagaagagagactgagagtagctgcatgt
tgggcaccaaggacctagagagagaaagtggagagctggacataaggctt
agctcggggaggggcagcagactggctggtgctatcttctccaacgatgc
aatcctaaatgtcaaaatcccaaggataaaactccaaattataaaattcc
cagagaccaaatctccaaggtgtagttccataggtgtgtggaggggggat
ggtcattgtaaagctttctttacaggatttctgcgcgtggaacaatggag
ggattgtgtcttttggattttaggatgagcagaggcagcagcatgcagag
tgcgggagaagaatccatttgaattttgttctcctatgggaaagggagag
aacccaaaagtcccccaggactttgatgtgaggaggggcagaaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105856231_105857521
seq2: B6Ng01-320D22.b_44_1143

seq1  GAATTCTGTTATTACTATGATTCATAAAAGCCAGTGCCAGGCAGATTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATTACTATGATTCATAAAAGCCAGTGCCAGGCAGATTTGA  50

seq1  TTGACATGTATGAACCACTATAGAAACTAATAAGGAAGAGCTTTGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGTATGAACCACTATAGAAACTAATAAGGAAGAGCTTTGTAAAT  100

seq1  CCTTAGTGTTCTTACTTTAGTATAACTAACATTTTATGTTAGGTTTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGTTCTTACTTTAGTATAACTAACATTTTATGTTAGGTTTGGTA  150

seq1  TAGAAATAAACTTAAAGGTACACTATATATTACTGTGCAGCAATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAACTTAAAGGTACACTATATATTACTGTGCAGCAATTTATTT  200

seq1  TAATATTTTTTTTCAGATGCATTTTGCAGAGGCATCAGAAAACTAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTTTTTCAGATGCATTTTGCAGAGGCATCAGAAAACTAAAGAA  250

seq1  TGATTGGGTTATTTTATTTCTCAATATTAATTGAAGCAGATACTTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGTTATTTTATTTCTCAATATTAATTGAAGCAGATACTTGTGAA  300

seq1  GTCATTGGGAGGTGAGCCAATTCTGGTTCAACAATTTAATCACAAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGGAGGTGAGCCAATTCTGGTTCAACAATTTAATCACAAATACT  350

seq1  TGAGGGATTTTTTTATTTTTTTATTTTTTTGCCTTGTTTTATTACAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATTTTTTTATTTTTTTATTTTTTTGCCTTGTTTTATTACAAGTC  400

seq1  TAATACTCTTCAGTCCAAAAGTCTCATATGTGTAAAAGGCAAACTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTCTTCAGTCCAAAAGTCTCATATGTGTAAAAGGCAAACTACTTT  450

seq1  TGTGTTCTTGACATTCAGTAAAAATATCACAAATCATTTTAAAATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTGACATTCAGTAAAAATATCACAAATCATTTTAAAATATACA  500

seq1  AGCCTTGCTTTTTATTTTAGTATAGTAAATATCTCTTAATTTTATTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTTTTTATTTTAGTATAGTAAATATCTCTTAATTTTATTGAGA  550

seq1  GATAATTTCAATGAGATTAATTTGAAATTTTAAGATATAGCTCACTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCAATGAGATTAATTTGAAATTTTAAGATATAGCTCACTATTG  600

seq1  TAGCTGACTTTATTCAGCGTATATATCAGAAAGATTAGCTAGTTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACTTTATTCAGCGTATATATCAGAAAGATTAGCTAGTTTTGTTT  650

seq1  TTCCCAAAAGATTCTTTCATCTTATATAAATTAACCCAAATGTGGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAAGATTCTTTCATCTTATATAAATTAACCCAAATGTGGGAAAA  700

seq1  TTTTTTTTCTAAATGTGTAGAACAAGCAGATGTTGAAAGCCAGCTTGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTAAATGTGTAGAACAAGCAGATGTTGAAAGCCAGCTTGTAC  750

seq1  GATAATTGTATTAAAATATGTAAGCCCTTTGGCTTCATTAGTTTGGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGTATTAAAATATGTAAGCCCTTTGGCTTCATTAGTTTGGCATT  800

seq1  TAAGATCTTGTTAACATACATGAGTAGTTCTGCCAAAACCACAATTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTTGTTAACATACATGAGTAGTTCTGCCAAAACCACAATTTTTA  850

seq1  TTATCTTTGATGCTAGAGTAAGATCAGTGTTGTTCCTTTAAATTGCCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTGATGCTAGAGTAAGATCAGTGTTGTTCCTTTAAATTGCCAAA  900

seq1  GAGTAAACCTTGGTATGGAGTTAAAATTGTTCATGTGAGTTAGATACAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTAAACCTTGGTATGGAGTTAAAATTGTTCATGTGAGTTAGATAC-AT  949

seq1  CTTTTGACATATGTATTTATACATTAATATAGAATGTCCCAGTTTTCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGACATATGTATTTATACATTAATATAGAATGTCCCAGTTTTCATT  999

seq1  CACAGTCTAGTTTTTCTTATCTTTGCTTTGACTGCTAGATTTAAAATTTT  1050
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  CACAGTCTAGTTTTTCTTATCTTTGCTTTGACTGCTAGATT--AAATTTT  1047

seq1  TAAATTGTTTAGAATATCTTATCCCTCCCTCAATCACCCAGCCTTTTGAT  1100
      | |||||||||| ||||| ||||||||||   ||||||||| ||||||||
seq2  T-AATTGTTTAG-ATATC-TATCCCTCCCCTCATCACCCAG-CTTTTGAT  1093

seq1  GTTGACTGTGTTTATTTTGAGACTTTGGCTTAGTGAGAAAGTGGAAAAAC  1150
      | |||||                                           
seq2  GGTGACT-------------------------------------------  1100

seq1  TTGGGGAATCATGGAGTTTGCTTTCCTCTGTAGCTTTGTCCACACCAATC  1200
                                                        
seq2  --------------------------------------------------  1100

seq1  CCAACTCAGACTTTCAGGTGACTCAGAGTTCTAGTCCAGCATAGAAGTAG  1250
                                                        
seq2  --------------------------------------------------  1100

seq1  AGTATCACTTAGAACTTACATTTCAGCTTGGCATGGTGACT  1291
                                               
seq2  -----------------------------------------  1100

seq1: chr7_105958791_105959481
seq2: B6Ng01-320D22.g_63_761 (reverse)

seq1  TCTCC-TTCTGCCCCTCCTCAC-TC-AAGTCCT-GGGGACTTTTGGCTTC  46
      ||||| |||||||||||||||| || ||||||| |||||||||||| |||
seq2  TCTCCTTTCTGCCCCTCCTCACATCAAAGTCCTGGGGGACTTTTGGGTTC  50

seq1  TCTCCCTTTCCC-TAGGAGA--CAAATTCAAATGGCTTCTTCTCCC-CAC  92
      |||||||||||| |||||||   |||||||||||| |||||||||| |||
seq2  TCTCCCTTTCCCATAGGAGAACAAAATTCAAATGGATTCTTCTCCCGCAC  100

seq1  TCTGCATGCTGCTGCCTCTGCTCATCCTAAAATCCAAAAGACACAATCCC  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGCTGCTGCCTCTGCTCATCCTAAAATCCAAAAGACACAATCCC  150

seq1  TCCATTGTTCCACGCGCAGAAATCCTGTAAAGAAAGCTTTACAATGACCA  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTCCACGCGCAGAAATCCTGTAAAGAAAGCTTTACAATGACCA  200

seq1  TCCCCCCTCCACACACCTATGGAACTACACCTTGGAGATTTGGTCTCTGG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCACACACCTATGGAACTACACCTTGGAGATTTGGTCTCTGG  250

seq1  GAATTTTATAATTTGGAGTTTTATCCTTGGGATTTTGACATTTAGGATTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATAATTTGGAGTTTTATCCTTGGGATTTTGACATTTAGGATTG  300

seq1  CATCGTTGGAGAAGATAGCACCAGCCAGTCTGCTGCCCCTCCCCGAGCTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTGGAGAAGATAGCACCAGCCAGTCTGCTGCCCCTCCCCGAGCTA  350

seq1  AGCCTTATGTCCAGCTCTCCACTTTCTCTCTCTAGGTCCTTGGTGCCCAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATGTCCAGCTCTCCACTTTCTCTCTCTAGGTCCTTGGTGCCCAA  400

seq1  CATGCAGCTACTCTCAGTCTCTCTTCTGGATCCCTCCACACTCTTGGATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCTACTCTCAGTCTCTCTTCTGGATCCCTCCACACTCTTGGATC  450

seq1  ATCAGCTGGTTCTTCCGCCCAGAATGGCTACTCATGCCACCCATGGCTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGGTTCTTCCGCCCAGAATGGCTACTCATGCCACCCATGGCTGC  500

seq1  TCTTGCATCTCCTCCCCCCAAGCAGCACCAGCAGCCAGGCCAGCTGTCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATCTCCTCCCCCCAAGCAGCACCAGCAGCCAGGCCAGCTGTCTT  550

seq1  GTGGTTGTCTTGTCCAGTTTGGCTGGCGGGTGTGGCTGGAAACCTGGGAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTCTTGTCCAGTTTGGCTGGCGGGTGTGGCTGGAAACCTGGGAC  600

seq1  ACCCAGACCCACACCCAACTCTCTTAGCCTTCATGGTCTGTGCTTCCTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACCCACACCCAACTCTCTTAGCCTTCATGGTCTGTGCTTCCTCA  650

seq1  TCCTGCATCCCTTGAAGGATGGGGTCTAGCCTCCACACCAAGAGAATTC  691
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCCTTGAAGGATGGGGTCTAGCCTCCACACCAAGAGAATTC  699