BAC Information

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BAC

Clone NameB6Ng01-322B23
Chromosome7 (Build37)
Map Location 57,410,998 - 57,510,861
singlet/doubletdoublet
Overlap geneNell1
Upstream gene5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322B23.bB6Ng01-322B23.g
ACCGA111048GA111049
length1,137928
definitionB6Ng01-322B23.b B6Ng01-322B23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,410,998 - 57,412,146)(57,509,937 - 57,510,861)
sequence
gaattctgtcaagtctatcagtcagggtaccatttgttaggcctttttat
tattttagaaacctagccttgtttttttctggatattgccttctcacagg
ccattgagacacagatgtgtgttccttttaaagtaccatgatggatggct
ctgggccagggccctcctggaattttccgtgtttggtctcatctccgaat
actgttctcttcttggtgcatcaccctctggcttctgatagcttcttctc
tacctgctcaccttgtttgggcagtttctcattggctggccccagaactt
cattgttcctctgtcagctgtacttcatggcattcttgctgacaggaaag
aacatgacctttgctgtgctgcactctctcaactttttttttttaaattt
ttttatccattttctcccacgaccaccagaaaagagctggccttcatgga
atatcaactgaacacagtacaacaagatacaataaggccaggtacaggcc
cttacatcaaggctgggggaggcaatctagtaggagaaaaatataggcga
atgagtcagagatatccccactccaggatgtccccccaaacaccaagcca
acaaccataacatataacagaggacctagcacagatctatacaggctatg
tgactgcatagtctctgtgagcccccatgagtctcgcttagttaattcga
caggctgtgctctccaggtatcctcaacccttctggtttcctcaattcct
ccttcctttcttacatgtggtcctcccaccctgagctccaggggaaaggg
tatctgatggagatctccaacctggaatctctctccacctaatatttggt
tgtgggtctctgtattctctcccatcagctgctggaggtagtctcactga
tgacaacaggactaggcactctcatcctgactccttgagaagacctggcc
tttttattttttctgccatactttacctgtgtgtgtgatcctgccagtgt
gtcaaatagagtagcaggaacagtggatttgacatctcgatggcttagga
gcgtcattcagctaaatctagagtagtaaatgatgccacgacacattaca
gttccataaggctgaatacatgcaaatgtgacagagc
gaattctaatcaatccttaatatgtttaataaataagacccaattccaaa
gtttaaattgagacaaacctactggtatatttttaaaataacctgaactg
cctttattgttggataagtgcatctacatccattagcccagggagaaacg
tttttcaactctattttgaaaattatcgccagtaaaacgtaatctgtcat
tacttttaaatcttcctgattgttgtatgttgtgacctctgcactgagtt
ctgtgttagtagaaaaacacaattattccacttttcctattttagagtaa
ctcgcctgctcagtgctcaaatgtaaacattccaacttctatacaaatca
cctcaccaggctctgacttgaattcctaacaatacataaatatctgcaag
ttgaaaactgccactgtgctgaagaaatgttccagaaaagtcgataattg
ggcaaatggaagcaagactgttagaagacttcctcaacttggtttaaaaa
taatgggttgggagcttgctatgagatcatgtctcctagtaatgtcagaa
gctgcacccacaaggtctcatcagtgtggctgcctaaataggagcttaat
aagaacaacaccaataaacatgctaaagtggacagagaaactcctacaat
gccttgattctacatgaagactcacacaactaaggagtgctgaaagcaga
agaaatagtctcccccacagaagagtatagcaattgtttatccaatgcca
aatggtcagccctgaaaacacaaatacaagtaacattatatgggctgagt
gggctatattaaggaacatatatgtatattcatatatacatgcaataaca
attgattaaattgagaatgtggatttgaaagagatcaaaggaggggtata
ttggggcaatatgggaggggggaagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_57410998_57412146
seq2: B6Ng01-322B23.b_46_1182

seq1  GAATTCTGTCAAGTCTATCAGTCAGGGTACCATTTGTTAGGCCTTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAAGTCTATCAGTCAGGGTACCATTTGTTAGGCCTTTTTAT  50

seq1  TATTTTAGAAACCTAGCCTTGTTTTTTTCTGGATATTGCCTTCTCACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAAACCTAGCCTTGTTTTTTTCTGGATATTGCCTTCTCACAGG  100

seq1  CCATTGAGACACAGATGTGTGTTCCTTTTAAAGTACCATGATGGATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGAGACACAGATGTGTGTTCCTTTTAAAGTACCATGATGGATGGCT  150

seq1  CTGGGCCAGGGCCCTCCTGGAATTTTCCGTGTTTGGTCTCATCTCCGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCAGGGCCCTCCTGGAATTTTCCGTGTTTGGTCTCATCTCCGAAT  200

seq1  ACTGTTCTCTTCTTGGTGCATCACCCTCTGGCTTCTGATAGCTTCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCTTCTTGGTGCATCACCCTCTGGCTTCTGATAGCTTCTTCTC  250

seq1  TACCTGCTCACCTTGTTTGGGCAGTTTCTCATTGGCTGGCCCCAGAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTCACCTTGTTTGGGCAGTTTCTCATTGGCTGGCCCCAGAACTT  300

seq1  CATTGTTCCTCTGTCAGCTGTACTTCATGGCATTCTTGCTGACAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCCTCTGTCAGCTGTACTTCATGGCATTCTTGCTGACAGGAAAG  350

seq1  AACATGACCTTTGCTGTGCTGCACTCTCTCAACTTTTTTTTTTTAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCTTTGCTGTGCTGCACTCTCTCAACTTTTTTTTTTTAAATTT  400

seq1  TTTTATCCATTTTCTCCCACGACCACCAGAAAAGAGCTGGCCTTCATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCATTTTCTCCCACGACCACCAGAAAAGAGCTGGCCTTCATGGA  450

seq1  ATATCAACTGAACACAGTACAACAAGATACAATAAGGCCAGGTACAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAACTGAACACAGTACAACAAGATACAATAAGGCCAGGTACAGGCC  500

seq1  CTTACATCAAGGCTGGGGGAGGCAATCTAGTAGGAGAAAAATATAGGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATCAAGGCTGGGGGAGGCAATCTAGTAGGAGAAAAATATAGGCGA  550

seq1  ATGAGTCAGAGATATCCCCACTCCAGGATGTCCCCCCAAACACCAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAGAGATATCCCCACTCCAGGATGTCCCCCCAAACACCAAGCCA  600

seq1  ACAACCATAACATATAACAGAGGACCTAGCACAGATCTATACAGGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATAACATATAACAGAGGACCTAGCACAGATCTATACAGGCTATG  650

seq1  TGACTGCATAGTCTCTGTGAGCCCCCATGAGTCTCGCTTAGTTAATTCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCATAGTCTCTGTGAGCCCCCATGAGTCTCGCTTAGTTAATTCGA  700

seq1  CAGGCTGTGCTCTCCAGGTATCCTCAACCCTTCTGGTTTCCTCAATTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTGCTCTCCAGGTATCCTCAACCCTTCTGGTTTCCTCAATTCCT  750

seq1  CCTTCCTTTCTTACATGTGGTCCTCCCACCCTGAGCTCCAGGGGAAGGGG  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTCCTTTCTTACATGTGGTCCTCCCACCCTGAGCTCCAGGGGAAAGGG  800

seq1  TATCTGATGGAGATCTCCAACCTGGAATCTCTCTCCACCTAATATTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATGGAGATCTCCAACCTGGAATCTCTCTCCACCTAATATTTGGT  850

seq1  TGTGGGTCTCTGTATTCTCTCCCATCAGCTGCTGGAGGTAGTCTCACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCTCTGTATTCTCTCCCATCAGCTGCTGGAGGTAGTCTCACTGA  900

seq1  TGACAACAGGACTAGGCACTCTCATCCTGACTCCTTGAGAAGACCTGGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAGGACTAGGCACTCTCATCCTGACTCCTTGAGAAGACCTGGCC  950

seq1  TTTTTA-TTTTTCTGCCATACTTTACCTGTGTGTGTTGGATCCTGGCCAG  999
      |||||| |||||||||||||||||||||||||||||  |||||| |||||
seq2  TTTTTATTTTTTCTGCCATACTTTACCTGTGTGTGT--GATCCT-GCCAG  997

seq1  TGTGGTCAAATAAGAGTAGCAGG-ACAGTGGAATTTGACATCTCGGATGG  1048
      ||| ||||||| ||||||||||| ||||||| |||||||||||| ||| |
seq2  TGT-GTCAAAT-AGAGTAGCAGGAACAGTGG-ATTTGACATCTC-GAT-G  1042

seq1  GCTTA-GAGCGTCATTCAGCTAAAATCTAGAGTAGTAAATGGATG-CACG  1096
      ||||| ||||||||||||||| |||||||||||||||||| |||| ||||
seq2  GCTTAGGAGCGTCATTCAGCT-AAATCTAGAGTAGTAAAT-GATGCCACG  1090

seq1  ACACATTTACAGTTTCCATAAAGCTGATAACCATGCAAAAAATGTGACAG  1146
      ||||| |||||| |||||||| ||||| |  |||||   |||||||||||
seq2  ACACA-TTACAG-TTCCATAAGGCTGA-ATACATGC---AAATGTGACAG  1134

seq1  AGC  1149
      |||
seq2  AGC  1137

seq1: chr7_57509937_57510861
seq2: B6Ng01-322B23.g_66_993 (reverse)

seq1  CCTC-TCCCCCCT-CCATATTGCCCCAATATACCCCTCC-TTGATCTCTT  47
      |||| |||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CCTCTTCCCCCCTCCCATATTGCCCCAATATACCCCTCCTTTGATCTCTT  50

seq1  TCAAATCCACATTCTCAATTTAATCAATTGTTATTGCATGTATATATGAA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCCACATTCTCAATTTAATCAATTGTTATTGCATGTATATATGAA  100

seq1  TATACATATATGTTCCTTAATATAGCCCACTCAGCCCATATAATGTTACT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATATGTTCCTTAATATAGCCCACTCAGCCCATATAATGTTACT  150

seq1  TGTATTTGTGTTTTCAGGGCTGACCATTTGGCATTGGATAAACAATTGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTGTTTTCAGGGCTGACCATTTGGCATTGGATAAACAATTGCT  200

seq1  ATACTCTTCTGTGGGGGAGACTATTTCTTCTGCTTTCAGCACTCCTTAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCTGTGGGGGAGACTATTTCTTCTGCTTTCAGCACTCCTTAGT  250

seq1  TGTGTGAGTCTTCATGTAGAATCAAGGCATTGTAGGAGTTTCTCTGTCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTCTTCATGTAGAATCAAGGCATTGTAGGAGTTTCTCTGTCCA  300

seq1  CTTTAGCATGTTTATTGGTGTTGTTCTTATTAAGCTCCTATTTAGGCAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCATGTTTATTGGTGTTGTTCTTATTAAGCTCCTATTTAGGCAGC  350

seq1  CACACTGATGAGACCTTGTGGGTGCAGCTTCTGACATTACTAGGAGACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGATGAGACCTTGTGGGTGCAGCTTCTGACATTACTAGGAGACAT  400

seq1  GATCTCATAGCAAGCTCCCAACCCATTATTTTTAAACCAAGTTGAGGAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATAGCAAGCTCCCAACCCATTATTTTTAAACCAAGTTGAGGAAG  450

seq1  TCTTCTAACAGTCTTGCTTCCATTTGCCCAATTATCGACTTTTCTGGAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAACAGTCTTGCTTCCATTTGCCCAATTATCGACTTTTCTGGAAC  500

seq1  ATTTCTTCAGCACAGTGGCAGTTTTCAACTTGCAGATATTTATGTATTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAGCACAGTGGCAGTTTTCAACTTGCAGATATTTATGTATTGT  550

seq1  TAGGAATTCAAGTCAGAGCCTGGTGAGGTGATTTGTATAGAAGTTGGAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTCAAGTCAGAGCCTGGTGAGGTGATTTGTATAGAAGTTGGAAT  600

seq1  GTTTACATTTGAGCACTGAGCAGGCGAGTTACTCTAAAATAGGAAAAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATTTGAGCACTGAGCAGGCGAGTTACTCTAAAATAGGAAAAGTG  650

seq1  GAATAATTGTGTTTTTCTACTAACACAGAACTCAGTGCAGAGGTCACAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGTGTTTTTCTACTAACACAGAACTCAGTGCAGAGGTCACAAC  700

seq1  ATACAACAATCAGGAAGATTTAAAAGTAATGACAGATTACGTTTTACTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACAATCAGGAAGATTTAAAAGTAATGACAGATTACGTTTTACTGG  750

seq1  CGATAATTTTCAAAATAGAGTTGAAAAACGTTTCTCCCTGGGCTAATGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAATTTTCAAAATAGAGTTGAAAAACGTTTCTCCCTGGGCTAATGGA  800

seq1  TGTAGATGCACTTATCCAACAATAAAGGCAGTTCAGGTTATTTTAAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCACTTATCCAACAATAAAGGCAGTTCAGGTTATTTTAAAAAT  850

seq1  ATACCAGTAGGTTTGTCTCAATTTAAACTTTGGAATTGGGTCTTATTTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGTAGGTTTGTCTCAATTTAAACTTTGGAATTGGGTCTTATTTAT  900

seq1  TAAACATATTAAGGATTGATTAGAATTC  925
      ||||||||||||||||||||||||||||
seq2  TAAACATATTAAGGATTGATTAGAATTC  928