BAC Information

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BAC

Clone NameB6Ng01-323F12
Chromosome7 (Build37)
Map Location 4,080,802 - 4,081,877
singlet/doubletsinglet
Overlap geneTtyh1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Downstream geneLeng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323F12.bB6Ng01-323F12.g
ACCGA111945GA111946
length1,087859
definitionB6Ng01-323F12.b B6Ng01-323F12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctatgtagctatggatgaccttgaaggcttctgatcttacttc
ctgagtgctgggcacaaggcaaactttatgtgttgctagggatcaaactt
acagctttgacaagcactttaccaatggagggacacccttaattccattc
gttttgttttttgttttttgtttggttttgcttcagaacaaggtgtgacc
aggtctagataacccagagtgcccatgaactcacacttcaacctcctaat
tgctgggattataggtgggcaatatcacaccctagacgttcatcccttct
gcttcagccatatctggaagcaggtccagctgacctaattatgcttcctt
gttgtcctccagtccaaccctgtgaccacggaggcccagggcccacttcc
ctgtgtctatcacacccacaggcattttgcccctttcccatcctgcctgg
attggaagatgctgctgctctctaccctacaacacactgggccttggggg
ataggagggagtgctgaaggcatcagggatttgtggggtcacctgagctg
agccctgtctcctcctgggtcaggttcagcacataggtgtctgggttgga
gcagaagtcactgaggccctgatgaaggaagcagggaggggtcagatcag
aatgtccaatttcatatttccacagaactcagaagtccaggccctaaccc
tcctccctcagacccaggggtccagacttcagctttcctcagactgcgag
tctaggcaccagcctctgctctcagatccagcaattaaagctaagacctc
agaactgtggtcatgaccccctccaccttagtgtgtatggcattaattca
gatcacacttcaccccagaatcagaactcctgaattccagagccccatac
tcaccaacagctgtggcagcctctaggcccatagaacccccagctcagga
caagcactcaggagactcatggtcagtcatccctagaagtggggaggcgg
cctgaactcaggacttgatcagctttgcctttttctaccacctaatatcc
aatcacagccctcccccaataacccaacaacctctgt
gaattctttgttcagctctgagccccattttttaatgggattatttgatt
ttctggagtccaccttcttgagttctttatatatgttggatattattccc
ctatctgatttaggataggtaaaggtcctttcccaatctgttgttggtct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtctattcttgctcttagagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatatcttcaaggcttctcctgta
catctttaagtgatttattaaagtccatcttgatgtcctctaccatcatt
atgagatatgcttttaaatccgagtctagctttttggatgtgttggggta
tccaggactggctcaggtgggagtgctgggttctgatgatggtgagtggt
cttggttcctgttagtaagattcttacatttgccttttgccatctggtaa
tctctggagttagttgttatagttgtctctgtttggagcttgctcctccc
ataattctgttaacctctgccagcagacctgtgagactagctctctcctg
agtttcagtgttcagagtactctccgcaggcaagctctcctcttgcaggg
aaggtgcacagattatctggtgttcggacctgcctcttggtgaacatgaa
ggcccaaaacaggacctgtcccagaagctgtgtagcttctgtagtctaca
ctctcacctgcacagactagtccctcagagatccaggaccagagatggct
cccccaagtgctccggcaaagccctcccaggcgggtggacaccccttact
tccggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4080802_4081877
seq2: B6Ng01-323F12.b_51_1137 (reverse)

seq1  ACAGAGGTTGGTGGG-TATT-GGGGAGGGCTGTGATTGGATA-TAGGGTG  47
      |||||||||| |||| |||| ||||||||||||||||||||| ||||  |
seq2  ACAGAGGTTGTTGGGTTATTGGGGGAGGGCTGTGATTGGATATTAGGTGG  50

seq1  TAGAAAAAGGCAAAGCTGATCAAGTCCTGAGTTCA-GCCGCCTCCCCCCT  96
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  TAGAAAAAGGCAAAGCTGATCAAGTCCTGAGTTCAGGCCGCCTCCCCACT  100

seq1  TCTA-GGATGACTG-CCATGAGTCTCCTG-GTGCTTGTCCTGAGCT-GGG  142
      |||| ||||||||| |||||||||||||| |||||||||||||||| |||
seq2  TCTAGGGATGACTGACCATGAGTCTCCTGAGTGCTTGTCCTGAGCTGGGG  150

seq1  GTTCTATGGGCCTAGAGGCTGCCACAGCTG-TGGTGAGTATGGGGCTCTG  191
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTCTATGGGCCTAGAGGCTGCCACAGCTGTTGGTGAGTATGGGGCTCTG  200

seq1  G-ATTCAGGAGTTCTGATTCTGGGGTG-AGTGTGATCTG-ATTAATGCCA  238
      | ||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GAATTCAGGAGTTCTGATTCTGGGGTGAAGTGTGATCTGAATTAATGCCA  250

seq1  TACACACTAAGGTGGAGGGGGTCATGACCACAGTTCTGAGGTCTTAGCCT  288
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACACACTAAGGTGGAGGGGGTCATGACCACAGTTCTGAGGTCTTAGCTT  300

seq1  TAATTGCTGGATCCTGAGAGCAGAGGCTGGTGCCTAGACTCGCAGTCTGA  338
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTGGAT-CTGAGAGCAGAGGCTGGTGCCTAGACTCGCAGTCTGA  349

seq1  GGAAAGCTGAAGTCTGGACCCCTGGGTCTGAGGGAGGAGGGTTAGGGCCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTGAAGTCTGGACCCCTGGGTCTGAGGGAGGAGGGTTAGGGCCT  399

seq1  GGACTTCTGAGTTCTGTGGAAATATGAAATTGGACATTCTGATCTGACCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTGAGTTCTGTGGAAATATGAAATTGGACATTCTGATCTGACCC  449

seq1  CTCCCTGCTTCCTTCATCAGGGCCTCAGTGACTTCTGCTCCAACCCAGAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTTCCTTCATCAGGGCCTCAGTGACTTCTGCTCCAACCCAGAC  499

seq1  ACCTATGTGCTGAACCTGACCCAGGAGGAGACAGGGCTCAGCTCAGGTGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTGCTGAACCTGACCCAGGAGGAGACAGGGCTCAGCTCAGGTGA  549

seq1  CCCCACAAATCCCTGATGCCTTCAGCACTCCCTCCTATCCCCCAAGGCCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAATCCCTGATGCCTTCAGCACTCCCTCCTATCCCCCAAGGCCC  599

seq1  AGTGTGTTGTAGGGTAGAGAGCAGCAGCATCTTCCAATCCAGGCAGGATG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTTGTAGGGTAGAGAGCAGCAGCATCTTCCAATCCAGGCAGGATG  649

seq1  GGAAAGGGGCAAAATGCCTGTGGGTGTGATAGACACAGGGAAGTGGGCCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGCAAAATGCCTGTGGGTGTGATAGACACAGGGAAGTGGGCCC  699

seq1  TGGGCCTCCGTGGTCACAGGGTTGGACTGGAGGACAACAAGGAAGCATAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTCCGTGGTCACAGGGTTGGACTGGAGGACAACAAGGAAGCATAA  749

seq1  TTAGGTCAGCTGGACCTGCTTCCAGATATGGCTGAAGCAGAAGGGATGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCAGCTGGACCTGCTTCCAGATATGGCTGAAGCAGAAGGGATGAA  799

seq1  CGTCTAGGGTGTGATATTGCCCACCTATAATCCCAGCAATTAGGAGGTTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAGGGTGTGATATTGCCCACCTATAATCCCAGCAATTAGGAGGTTG  849

seq1  AAGTGTGAGTTCATGGGCACTCTGGGTTATCTAGACCTGGTCACACCTTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAGTTCATGGGCACTCTGGGTTATCTAGACCTGGTCACACCTTG  899

seq1  TTCTGAAGCAAAACCAAACAAAAAACAAAAAACAAAACGAATGGAATTAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGCAAAACCAAACAAAAAACAAAAAACAAAACGAATGGAATTAA  949

seq1  GGGTGTCCCTCCATTGGTAAAGTGCTTGTCAAAGCTGTAAGTTTGATCCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCCTCCATTGGTAAAGTGCTTGTCAAAGCTGTAAGTTTGATCCC  999

seq1  TAGCAACACATAAAGTTTGCCTTGTGCCCAGCACTCAGGAAGTAAGATCA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACACATAAAGTTTGCCTTGTGCCCAGCACTCAGGAAGTAAGATCA  1049

seq1  GAAGCCTTCAAGGTCATCCATAGCTACATAGAGAATTC  1076
      ||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTTCAAGGTCATCCATAGCTACATAGAGAATTC  1087