BAC Information

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BAC

Clone NameB6Ng01-328O18
Chromosome7 (Build37)
Map Location 148,110,765 - 148,260,641
singlet/doubletdoublet
Overlap geneNlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4
Upstream geneKndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b
Downstream genePkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328O18.bB6Ng01-328O18.g
ACCGA116048GA116049
length3531,120
definitionB6Ng01-328O18.b B6Ng01-328O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,260,290 - 148,260,641)(148,110,765 - 148,111,884)
sequence
aagggcagcactgtctacatagtgagaaccaggatagccaaggctatgaa
gagagagagaggagggaggagatagaggcagagaaacagaaagattctgg
cttctgaacatacactgctagggctggagagatgggttggtggttaagag
cactggctgctcttccagaggatccaggttcaattcccagcacccacacg
gcagctgacagttatctgtaactccagttctaggtcagacctacgtgcag
gcacaacacagcctgactgctgacatgggcttctgagatgcatctgcctc
accttccttttattcacgcttcctttcccccttcccttaacttctaagaa
tga
gaattcagctctactcaatacttgcccaaggctcacctactgttgagagt
atacaccaggataacggcaggacctggtcctagggacctgcagcccacac
ttgggttttgttcaaatttgttggggaggggatgcaaaggatgcaaggga
tgtgggataaatgatagttctagaacctcaggaccttaggtaggaaggaa
aggcctggaaggagcgttacaggcaccaaccttgttctttctctctacag
ctctcaaagcaccaagaaacaacccccagtctccttgctgcgtccactct
gtgagacaatgactaccccgaaatgtcatctgagtgttctgatgtgagtc
actgttctcctgcatggaagggatttacaccgggatggcctgtacagaga
cagaatttgccttctagggaaggcttaggacataggcctacctgggttcc
accactattaggggctgcaagggaaggactggtgctagacctcgtgggag
tcagagtgcagcacagcctttggggaccgaccgagaaagcaacagtggtt
ttcttctgaaggcagctgccaagtgctgatggacactgcctgggcatccc
tctgcaggaaagtgttcagggagatcagcagctggtgtaccctgcctctc
tgtgcctttcagcaagtcagcctgcccatgtgttggtttcctccctgtaa
gatacccagctgatccgagctcagaggactgctataagacttactgaagc
ttcacgggtagagttcttaggatatgctaggtttatattactgttagcta
tcaccagcattcagagagtaagaagagttataggaactgatagaggcagg
ccatggtgaagcagatagtcaggcatacatcaatagaggacgaggaggaa
aactggcttcgtgggagtcagggtccagcaacatgaaaatgaaacaaaag
gagccaaaaaggacagtcacatctggcccaggaattcttacagaaaacag
gttacacaggaggggctcccggtcatgatttgtataggaaaattaaatga
tttaataattagtcagaaacagcagagtggttcagccactgcgatgacag
ctcaagctctgggggatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148260290_148260641
seq2: B6Ng01-328O18.b_56_407 (reverse)

seq1  CATTCTTAGAAGTTAAGGGAAGGGGGAAAGGAAGTGTAAATAAAAGGAAG  50
      |||||||||||||||||||||||||||||||||| || ||||||||||||
seq2  CATTCTTAGAAGTTAAGGGAAGGGGGAAAGGAAGCGTGAATAAAAGGAAG  50

seq1  GTGAGGCAGATGCATCTCAGAAGCCCATGTCAGCAGTCAGGCTGTGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGATGCATCTCAGAAGCCCATGTCAGCAGTCAGGCTGTGTTGT  100

seq1  GCCTGCACGTAGGTCTGACCTAGAACTGGAGTTACAGATAACTGTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACGTAGGTCTGACCTAGAACTGGAGTTACAGATAACTGTCAGCT  150

seq1  GCCGTGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAGCAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTGGGTGCTGGGAATTGAACCTGGATCCTCTGGAAGAGCAGCCAG  200

seq1  TGCTCTTAACCACCAACCCATCTCTCCAGCCCTAGCAGTGTATGTTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACCACCAACCCATCTCTCCAGCCCTAGCAGTGTATGTTCAGA  250

seq1  AGCCAGAATCTTTCTGTTTCTCTGCCTCTATCTCCTCCCTCCTCTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATCTTTCTGTTTCTCTGCCTCTATCTCCTCCCTCCTCTCTCTC  300

seq1  TCTTCATAGCCTTGGCTATCCTGGTTCTCACTATGTAGACAGTGCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATAGCCTTGGCTATCCTGGTTCTCACTATGTAGACAGTGCTGCCC  350

seq1  TT  352
      ||
seq2  TT  352

seq1: chr7_148110765_148111884
seq2: B6Ng01-328O18.g_69_1188

seq1  GAATTCAGCTCTACTCAATACTTGCCCAAGGCTCACCTACTGTTGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCTACTCAATACTTGCCCAAGGCTCACCTACTGTTGAGAGT  50

seq1  ATACACCAGGATAACGGCAGGACCTGGTCCTAGGGACCTGCAGCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAGGATAACGGCAGGACCTGGTCCTAGGGACCTGCAGCCCACAC  100

seq1  TTGGGTTTTGTTCAAATTTGTTGGGGAGGGGATGCAAAGGATGCAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTGTTCAAATTTGTTGGGGAGGGGATGCAAAGGATGCAAGGGA  150

seq1  TGTGGGATAAATGATAGTTCTAGAACCTCAGGACCTTAGGTAGGAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATAAATGATAGTTCTAGAACCTCAGGACCTTAGGTAGGAAGGAA  200

seq1  AGGCCTGGAAGGAGCGTTACAGGCACCAACCTTGTTCTTTCTCTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGGAAGGAGCGTTACAGGCACCAACCTTGTTCTTTCTCTCTACAG  250

seq1  CTCTCAAAGCACCAAGAAACAACCCCCAGTCTCCTTGCTGCGTCCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGCACCAAGAAACAACCCCCAGTCTCCTTGCTGCGTCCACTCT  300

seq1  GTGAGACAATGACTACCCCGAAATGTCATCTGAGTGTTCTGATGTGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACAATGACTACCCCGAAATGTCATCTGAGTGTTCTGATGTGAGTC  350

seq1  ACTGTTCTCCTGCATGGAAGGGATTTACACCGGGATGGCCTGTACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCCTGCATGGAAGGGATTTACACCGGGATGGCCTGTACAGAGA  400

seq1  CAGAATTTGCCTTCTAGGGAAGGCTTAGGACATAGGCCTACCTGGGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTGCCTTCTAGGGAAGGCTTAGGACATAGGCCTACCTGGGTTCC  450

seq1  ACCACTATTAGGGGCTGCAAGGGAAGGACTGGTGCTAGACCTCGTGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTATTAGGGGCTGCAAGGGAAGGACTGGTGCTAGACCTCGTGGGAG  500

seq1  TCAGAGTGCAGCACAGCCTTTGGGGACCGACCGAGAAAGCAACAGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGCAGCACAGCCTTTGGGGACCGACCGAGAAAGCAACAGTGGTT  550

seq1  TTCTTCTGAAGGCAGCTGCCAAGTGCTGATGGACACTGCCTGGGCATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGAAGGCAGCTGCCAAGTGCTGATGGACACTGCCTGGGCATCCC  600

seq1  TCTGCAGGAAAGTGTTCAGGGAGATCAGCAGCTGGTGTACCCTGCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGAAAGTGTTCAGGGAGATCAGCAGCTGGTGTACCCTGCCTCTC  650

seq1  TGTGCCTTTCAGCAAGTCAGCCTGCCCATGTGTTGGTTTCCTCCCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTCAGCAAGTCAGCCTGCCCATGTGTTGGTTTCCTCCCTGTAA  700

seq1  GATACCCAGCTGATCCGAGCTCAGAGGACTGCTATAAGACTTACTGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCCAGCTGATCCGAGCTCAGAGGACTGCTATAAGACTTACTGAAGC  750

seq1  TTCACGGGTAGAGTTCTTAGGATATGCTAGGTTTATATTACTGTTAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGGTAGAGTTCTTAGGATATGCTAGGTTTATATTACTGTTAGCTA  800

seq1  TCACCAGCATTCAGAGAGTAAGAAGAGTTATAGGAACTGATAGAGGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCATTCAGAGAGTAAGAAGAGTTATAGGAACTGATAGAGGCAGG  850

seq1  CCATGGTGAAGCAGATAGTCAGGCATACATCAATAGAGGACGAGGAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGAAGCAGATAGTCAGGCATACATCAATAGAGGACGAGGAGGAA  900

seq1  AACTGGCTTCGTGGGAGTCAGGGTCCAGCAACATGAAAATGAAACAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTCGTGGGAGTCAGGGTCCAGCAACATGAAAATGAAACAAAAG  950

seq1  GAGCCAAAAA-GACAGTCACATCTGGCCCAGGAATTCTACCAGAAAACCA  999
      |||||||||| |||||||||||||||||||||||||||  ||||||||  
seq2  GAGCCAAAAAGGACAGTCACATCTGGCCCAGGAATTCTTACAGAAAACAG  1000

seq1  GGTACACA-GAGGGGCTCCC-GTCATGATTTGTAATAGGAAAAATAAATA  1047
      | |||||| ||||||||||| |||||||||||| ||||||||| ||||| 
seq2  GTTACACAGGAGGGGCTCCCGGTCATGATTTGT-ATAGGAAAATTAAATG  1049

seq1  AATAAATAAATAAGTCAGAAACAGCAGAGTGGTTCAGCCACTGGGGATGA  1097
      | | ||| ||| |||||||||||||||||||||||||||||| | |||||
seq2  ATTTAAT-AATTAGTCAGAAACAGCAGAGTGGTTCAGCCACT-GCGATGA  1097

seq1  CAGCTCAAGCCACTGGGGATGAT  1120
      ||||||||||    |||||||||
seq2  CAGCTCAAGCTCTGGGGGATGAT  1120