BAC Information

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BAC

Clone NameB6Ng01-329I06
Chromosome7 (Build37)
Map Location 52,418,850 - 52,548,188
singlet/doubletdoublet
Overlap geneSlc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik
Upstream geneKlk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1
Downstream geneTrpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I06.bB6Ng01-329I06.g
ACCGA116457GA116458
length1,027655
definitionB6Ng01-329I06.b B6Ng01-329I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,547,626 - 52,548,188)(52,418,850 - 52,419,503)
sequence
gaattcacctcagagatggcccaaattatacctgaagcttgagtgaccac
tcaccatattcatatacctcggagccctggaccttctggtgaggtggaat
ggagcagccagacagggttcatgctacactgctctccaggacaggagcaa
cccactcaagtttgcactcagcctagtctcttggaagttctctgtggcag
gcttttcttgcttctggtcctgatcttgggtgcaggtcaatccaataagc
tcaggaaatatgccaacagggatgggtaatattgtcaactagccagaatt
tagaactgtcaatcagataatgccaagggattatccataattggtttatt
gatgtatgaacatatacactaactgtgggctggggtcctgtcctgactaa
agaggagaaagctggctggacagctgtatccattgggctgcattttgcct
gtctcctcaactcagaggtccccagatgacaagctcctaccactaccact
tctcagtggaccctgaagcttgagctgcctcagattattcttttattatt
atcttattttattattcttttaatagtatccccaaagagtcaagaatggt
gcatgtctgtgacacctgcactcaaggagtggagggagaaggatcaggag
ttcaaagtcatcctgggctgcctagtgaagcggaagctagactgagctgt
aagagaccctgtctccaagagcaaacaatcaggcatggcaggggtcttta
ttttctattgctttgaagcaatgtcacaaccaaggaaacttattggattt
attggagcttatcgtttcatgggcatggcactggagtagcagctgagagc
tcacatcattatctccaagcaggagagaggagaggagaggagaggagacg
agacgagatgagacgagactacttggaaatggcatgggcttttgaaacct
caaggccatcctgtgtgacacacctcttacagtgaggccatacctcctaa
tccttccaaacagtttcactaactggg
gaattcacacagattcacttgcctgcctcctgaatgctggaattaaaggt
gtgcggcactcaaaaaaaaaatttttttttttaaagaaaaaaagagtgaa
ggagaggaagcaagccaaaggtcggatgggaatagagctcagaagcaaag
agatctgggaagagactcaaagagcttggaacgtgcagagtatctgggga
gtgtattatagtggggagcgaggcaactcggagttcaatcccagggacgt
ggccttggggtggacaggtggaggctctaggatggaagagctgaaagaga
gaggggtctagcctgcaagccaagccaagagaaactggcctagcatctcc
aggtagcctgttggaaggagagggcgggtccttcctacaaggggtggggc
ctcctttggtgggcgtggatgccccgccccgccccgacgctgagtccgct
acagccccgggcagcgggcactcgcagcctggttcccccccgagcggagc
tgcggggccgggccgggccggggcggaccccgggatcccggacgcggccg
cccgggcccgcggggcggggggattggcaggggacccgcgtgggcacagc
caccatggagttccggcaggaaggagtttcggaagctggcggggcgcccc
tgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52547626_52548188
seq2: B6Ng01-329I06.b_46_608 (reverse)

seq1  AATAAAATAAGATAATAATAAAAGAATAATCTGAGGCAGCTCAAGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAGATAATAATAAAAGAATAATCTGAGGCAGCTCAAGCTTCA  50

seq1  GGGTCCACTGAGAAGTGGTAGTGGTAGGAGCTTGTCATCTGGGGACCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCACTGAGAAGTGGTAGTGGTAGGAGCTTGTCATCTGGGGACCTCT  100

seq1  GAGTTGAGGAGACAGGCAAAATGCAGCCCAATGGATACAGCTGTCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGGAGACAGGCAAAATGCAGCCCAATGGATACAGCTGTCCAGCC  150

seq1  AGCTTTCTCCTCTTTAGTCAGGACAGGACCCCAGCCCACAGTTAGTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCCTCTTTAGTCAGGACAGGACCCCAGCCCACAGTTAGTGTAT  200

seq1  ATGTTCATACATCAATAAACCAATTATGGATAATCCCTTGGCATTATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATACATCAATAAACCAATTATGGATAATCCCTTGGCATTATCTG  250

seq1  ATTGACAGTTCTAAATTCTGGCTAGTTGACAATATTACCCATCCCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTTCTAAATTCTGGCTAGTTGACAATATTACCCATCCCTGTTG  300

seq1  GCATATTTCCTGAGCTTATTGGATTGACCTGCACCCAAGATCAGGACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTCCTGAGCTTATTGGATTGACCTGCACCCAAGATCAGGACCAG  350

seq1  AAGCAAGAAAAGCCTGCCACAGAGAACTTCCAAGAGACTAGGCTGAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAAAAGCCTGCCACAGAGAACTTCCAAGAGACTAGGCTGAGTGC  400

seq1  AAACTTGAGTGGGTTGCTCCTGTCCTGGAGAGCAGTGTAGCATGAACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAGTGGGTTGCTCCTGTCCTGGAGAGCAGTGTAGCATGAACCCT  450

seq1  GTCTGGCTGCTCCATTCCACCTCACCAGAAGGTCCAGGGCTCCGAGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTGCTCCATTCCACCTCACCAGAAGGTCCAGGGCTCCGAGGTAT  500

seq1  ATGAATATGGTGAGTGGTCACTCAAGCTTCAGGTATAATTTGGGCCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGGTGAGTGGTCACTCAAGCTTCAGGTATAATTTGGGCCATCT  550

seq1  CTGAGGTGAATTC  563
      |||||||||||||
seq2  CTGAGGTGAATTC  563

seq1: chr7_52418850_52419503
seq2: B6Ng01-329I06.g_66_720

seq1  GAATTCACACAGATTCACTTGCCTGCCTCCTGAATGCTGGAATTAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGATTCACTTGCCTGCCTCCTGAATGCTGGAATTAAAGGT  50

seq1  GTGCGGCACTCAAAAAAAAAATTTTTTTTTTTAAAGAAAAAAAGAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCACTCAAAAAAAAAATTTTTTTTTTTAAAGAAAAAAAGAGTGAA  100

seq1  GGAGAGGAAGCAAGCCAAAGGTCGGATGGGAATAGAGCTCAGAAGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAGCAAGCCAAAGGTCGGATGGGAATAGAGCTCAGAAGCAAAG  150

seq1  AGATCTGGGAAGAGACTCAAAGAGCTTGGAACGTGCAGAGTATCTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGGAAGAGACTCAAAGAGCTTGGAACGTGCAGAGTATCTGGGGA  200

seq1  GTGTATTATAGTGGGGAGCGAGGCAACTCGGAGTTCAATCCCAGGGACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTATAGTGGGGAGCGAGGCAACTCGGAGTTCAATCCCAGGGACGT  250

seq1  GGCCTTGGGGTGGACAGGTGGAGGCTCTAGGATGGAAGAGCTGAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGGGTGGACAGGTGGAGGCTCTAGGATGGAAGAGCTGAAAGAGA  300

seq1  GAGGGGTCTAGCCTGCAAGCCAAGCCAAGAGAAACTGGCCTAGCATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTAGCCTGCAAGCCAAGCCAAGAGAAACTGGCCTAGCATCTCC  350

seq1  AGGTAGCCTGTTGGAAGGAGAGGGCGGGTCCTTCCTACAAGGGGTGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTGTTGGAAGGAGAGGGCGGGTCCTTCCTACAAGGGGTGGGGC  400

seq1  CTCCTTTGGTGGGCGTGGATGCCCCGCCCCGCCCCGACGCTGAGTCCGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGGTGGGCGTGGATGCCCCGCCCCGCCCCGACGCTGAGTCCGCT  450

seq1  ACAGCCCCGGGCAGCGGGCACTCGCAGCCTGGTTCCCCCCCGAGCGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCGGGCAGCGGGCACTCGCAGCCTGGTTCCCCCCCGAGCGGAGC  500

seq1  TGCGGGGCCGGGCCGGGCCGGGGCGGACCCCGGGATCCCGGACGCGGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGCCGGGCCGGGCCGGGGCGGACCCCGGGATCCCGGACGCGGCCG  550

seq1  CCCGGGCCCGC-GGGCGGGGGGATTGGCAGGGGACCCGCGTGGGCACAGC  599
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGCCCGCGGGGCGGGGGGATTGGCAGGGGACCCGCGTGGGCACAGC  600

seq1  CACCATGGAGTTCCGGCAGG-AGGAGTTTCGGAAGCTGGCGGGGCGCGCC  648
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  CACCATGGAGTTCCGGCAGGAAGGAGTTTCGGAAGCTGGCGGGGCGC-CC  649

seq1  CTGGGG  654
      ||||||
seq2  CTGGGG  655