BAC Information

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BAC

Clone NameB6Ng01-329N23
Chromosome7 (Build37)
Map Location 23,040,910 - 23,042,052
singlet/doubletsinglet
Overlap geneLOC100043625
Upstream geneLOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094
Downstream geneLOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N23.bB6Ng01-329N23.g
ACCGA116715GA116716
length1,1511,177
definitionB6Ng01-329N23.b B6Ng01-329N23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagcccagggccaggctcaagactagggcattgttgaaggcca
gggagcaaagttcgattttgcttagatattgagcaagtcattgcttggag
gcacctataataaaacaatactgaaagaaagcacacagatccattcgcaa
ggacaagtttggagcatttattatacgggatgctatggttccaggagact
aagtttccgtgaaactctttgcctcaggactgcttccaggtttctaagcc
tgtcaagtgagtcactactagagtggatgtagcaaggtggctccacctcc
atcccgaggctggccaccaataatgggttcttctcgaatgacagcaactt
tctgatggacagcctcttcatgtttgatggcctcttcctgggtgaggttc
ttttttccatgagggtctctttctccacgatatcccgagaggaggatcct
ggaacacctacactcttaggtggctgcagggatccacagagctcctcttg
gggactgcaggaggacatattcctgtcaggcttctatgtgatgactctca
tggtcctgacaatgctgtggcttggggtgcctgggaaagtctgtgtggaa
gtaggtggtaaacatgcctcactgcccctgatcatggggcgcctcatgat
ttggtggatggtgggcctcctgctgggattgatcatcagcagttcaatga
tgacattgaaaatatcaatgggaacatgggaagggatgctgaagtttgca
gagatgatctcctgcttcaagtccacaaaagacttgccttggaaaggcaa
gttcccagataccatgaggaacaggaggacccctaaactccagatatcta
caggggggccctcatatttctctgcttgcaagagttcccggggcacagta
gggcagtgtgccacagaaatctgccagcttttgtccaggaatcacttcag
cagccaagccaaaatcacacagcttggcatttcccctgcagttcgatcaa
aatgttgctgggcctttatgtctctatggacaatgtgatgtcatggcagt
actgcaccgcatgtactatctgagcaacagctttcgagtctcgcctcttc
cttctaaagactcccacgttgatgaatgcaatctaagtagcttctcctct
g
gaattctcacctgaggaataccgaatggcagagaaacaactgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tacacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggcgtggacgtggagaaataggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagataatgtggtacatctacacaatg
tagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaag
gaaactcacacaatatgtactcactcataagtggatattagccccaaacc
taggatacccaagatataagatacaatttactaaacacatgaaactcaag
aagaatgaagactgaaatgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagttgagatga
aaggatggaccatgtatagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatgggatcacaggctccc
aatggaggagctagagaaagtacccaagagctaaagggatctgcaaccct
atagtgaacacatatgaactacagtaccccgagctctgactctagatgca
taatatattcaaggattgacttagtcgcatcactggaagaaagtccatga
ctgcaactttaatgcctagttacagtacgtccagcctaaaaggggaaatg
tgaatagtggctacagagcgagagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_23040910_23042052
seq2: B6Ng01-329N23.b_47_1197

seq1  GAATTCCAAGCCCAGGGCCA-GCTCAAGACTAGGGCATTGTTGAAGGCCA  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGCCAGGCTCAAGACTAGGGCATTGTTGAAGGCCA  50

seq1  GGGAGCAAAGTTCGATTTTGCTTAGATATTGAGCAAGTCATTGCTTGGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAAGTTCGATTTTGCTTAGATATTGAGCAAGTCATTGCTTGGAG  100

seq1  GCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTCGCAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTATAATAAAACAATACTGAAAGAAAGCACACAGATCCATTCGCAA  150

seq1  GGACAAGTTTGGAGCATTTATTATACGGGATGCTATGGTTCCAGGAGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGTTTGGAGCATTTATTATACGGGATGCTATGGTTCCAGGAGACT  200

seq1  AAGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCC  250

seq1  TGTCAAGTGAGTCACTACTAGAGTGGATGTAGCAAGGTGGCTCCACCTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTGAGTCACTACTAGAGTGGATGTAGCAAGGTGGCTCCACCTCC  300

seq1  ATCCCGAGGCTGGCCACCAATAATGGGTTCTTCTCGAATGACAGCAACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAGGCTGGCCACCAATAATGGGTTCTTCTCGAATGACAGCAACTT  350

seq1  TCTGATGGACAGCCTCTTCATGTTTGATGGCCTCTTCCTGGGTGAGGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGACAGCCTCTTCATGTTTGATGGCCTCTTCCTGGGTGAGGTTC  400

seq1  TTTTTTCCATGAGGGTCTCTTTCTCCACGATATCCCGAGAGGAGGATCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATGAGGGTCTCTTTCTCCACGATATCCCGAGAGGAGGATCCT  450

seq1  GGAACACCTACACTCTTAGGTGGCTGCAGGGATCCACAGAGCTCCTCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTACACTCTTAGGTGGCTGCAGGGATCCACAGAGCTCCTCTTG  500

seq1  GGGACTGCAGGAGGACATATTCCTGTCAGGCTTCTATGTGATGACTCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCAGGAGGACATATTCCTGTCAGGCTTCTATGTGATGACTCTCA  550

seq1  TGGTCCTGACAATGCTGTGGCTTGGGGTGCCTGGGAAAGTCTGTGTGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGACAATGCTGTGGCTTGGGGTGCCTGGGAAAGTCTGTGTGGAA  600

seq1  GTAGGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGCGCCTCATGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGCGCCTCATGAT  650

seq1  TTGGTGGATGGTGGGCCTCCTGCTGGGATTGATCATCAGCAGTTCAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGATGGTGGGCCTCCTGCTGGGATTGATCATCAGCAGTTCAATGA  700

seq1  TGACATTGAAAATATCAATGGGAACATGGGAAGGGATGCTGAAGTTTGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTGAAAATATCAATGGGAACATGGGAAGGGATGCTGAAGTTTGCA  750

seq1  GAGATGATCTCCTGCTTCAAGTCCACAAAAGACTTGCCTTGGAAAGGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGATCTCCTGCTTCAAGTCCACAAAAGACTTGCCTTGGAAAGGCAA  800

seq1  GTTCCCAGATACCATGAGGAACAGGAGGACCCCTAAACTCCAGATATCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGATACCATGAGGAACAGGAGGACCCCTAAACTCCAGATATCTA  850

seq1  CAGGGGGGCCCTCATATTTCTCTGCTTGCAAGAGTT-CCGGGGCACAGTA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGGGGGCCCTCATATTTCTCTGCTTGCAAGAGTTCCCGGGGCACAGTA  900

seq1  GGGCAGTGTGCCACAGAAACCTGCCAGCTTTTGTCCAGGAATCACTTCAG  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGCAGTGTGCCACAGAAATCTGCCAGCTTTTGTCCAGGAATCACTTCAG  950

seq1  CAGCCAAGCCAAAATCACACAGCTTGGCATTTCCCCTGCAG-TCGATCAA  997
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCCAAGCCAAAATCACACAGCTTGGCATTTCCCCTGCAGTTCGATCAA  1000

seq1  AATGTTGCT-GGCCTTTATGTCTCTATGGACAATGTGATGGTCATGGCAG  1046
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  AATGTTGCTGGGCCTTTATGTCTCTATGGACAATGTGAT-GTCATGGCAG  1049

seq1  TACTGCACCGCATGTACTATCTGAGCAAACAGCCTTCGAGTCTCG-CTCT  1095
      |||||||||||||||||||||||||| |||||| ||||||||||| ||||
seq2  TACTGCACCGCATGTACTATCTGAGC-AACAGCTTTCGAGTCTCGCCTCT  1098

seq1  --CCTCTAAAGAC-CCCACGTTGATG-ATGCAATCT-AGTAGCTCTCCCT  1140
        | ||||||||| |||||||||||| ||||||||| |||||||   |||
seq2  TCCTTCTAAAGACTCCCACGTTGATGAATGCAATCTAAGTAGCTTCTCCT  1148

seq1  CTG  1143
      |||
seq2  CTG  1151