BAC Information

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BAC

Clone NameB6Ng01-333N20
Chromosome7 (Build37)
Map Location 122,099,332 - 122,243,016
singlet/doubletdoublet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N20.bB6Ng01-333N20.g
ACCGA119519GA119520
length1,0981,169
definitionB6Ng01-333N20.b B6Ng01-333N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,099,332 - 122,100,409)(122,241,844 - 122,243,016)
sequence
gaattctattcattcaattcatctccaatcatctttcctttgcattagct
ttccctaaggtttctcaggcaatactggcagtaagtgacaaaggtacagc
ttaactgtcactatggtgagccccttggttcctcttatataatcgcctta
tccatgcccccaacttctacacattttcctctgtccacactttacttttc
ttcactaactgcttctgggattgattacagacccctatttcaaagaaaga
gactaggattaactcctcgaccttactggggtagcaaacgaactttctgg
attgtacattttaggaagcaggatgggagtggggctggggagagggctag
ggttaacaaaaataccagaaggatctagcaacactcactattaatttctt
ttcttgtggctcaaaagggctatgaaaaagcagcgtagtctgtcttacat
gttctcaggataaaggctgatgaagccatggcagtctttttccattaatt
cttagcgaagtcagccatctcccctgattctccacaactcaagctctttg
aataacatttagcaggataaacattttcctccctgtggtagaatgtggtg
aggaataatagtaatttacaacactctaatccaagcaattagttgtagca
tttcattaaaatgcaagtattctctgagtagaaacttggggggccaaggg
aggacttggtgggtcttgtgtagtcacaaacatgctgctgtcttagatgg
gtggagaacatttctgtttgctctcctcactcagcctggcacacagaaca
gcctgggctagaccgactctgcaattagctttagatagtgttgacagggc
aaggcttacagtggagacaaccctagatggacaccttgctatttgttcag
ttttcaactatgtttgagaagctttctgaaaagaaatggcaatggttcct
tttttcttggaaactaattcttcaactttgcttgcctgaaatttaaatcc
atatattgccatgttatgtctgtacatgcaccactagtgttggtaaacca
cagcattctcatcacacatcagagcctgtggtcctgggagaatgtcat
gaattcttcttctggttatgatagaagagtctctgctataactctgctta
ggaagaatatcttcaaagactggttagacatgcacacacaaaagaaacgt
aacttacggaaagcaggagagaagagccagggcagccaggaccttggtgg
ctatggcctctaagaggagagaaacgcattaaagtcccctaatcaccatt
tcttttcctctggggggcattttccagttcagaatgtggaacatagccag
tgggcagaaaacgatagtataatgtttatggaagtttcattttcctggaa
gacaaaatactagaatggtaagctgtcaggataatcaagatggagtagcc
agggtactaagagtaaaaggagctccagtctgacttgagctagatacact
ctcagaagggtaaaaaataaagaaacaagaacagagtgactgataagaaa
tggaaattccaaggagagttccagaaacctcaaagggagcagggagactt
aggttttcagcagagacatctgtagaactactcatggataatagcccata
aataacgcagccctctttagtactgaaactcgtccccagttaaaggaatc
taggctttggagtaaaacagtgacttagaagttgccttcatgtgacttgc
taaagggagagacagaataaaaaataaaaagaaaaataaagaagagaaaa
gagaagagaatagcaaagcaaagcaaaacaaagcaagagcttcagaagtc
caaaaggaaggaagaggttaactagaacatggggagagaaggatgatagt
gccccaagctgaacacagcctcagagcattggtggggaggagggatttgt
ttacttttctctgagtgattttgtcaactgagccttcacaattagggcca
ctcaataagaaaacactaaattaaaaaggcagaagaaataacaaaccaag
tgattgcacacccaaggataaaaccacaagaaacatgaaaggagcgaggt
ggtatggctcctcaaagaagtgcaatacccaacttgttcacgccaagaac
actgatacgggcagaagcagaagaagacatcaaaagtcatgtggtgaaaa
aagactgtgctggagggtcaacgagtagatgcaacttcagtttgggagag
aagtcggcacatagcgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122099332_122100409
seq2: B6Ng01-333N20.b_47_1144

seq1  GAATTCTATTCATTCAATTCATCTCCAATCATCTTTCCTTTGCATTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCATTCAATTCATCTCCAATCATCTTTCCTTTGCATTAGCT  50

seq1  TTCCCTAAGGTTTCTCAGGCAATACTGGCAGTAAGTGACAAAGGTACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAGGTTTCTCAGGCAATACTGGCAGTAAGTGACAAAGGTACAGC  100

seq1  TTAACTGTCACTATGGTGAGCCCCTTGGTTCCTCTTATATAATCGCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCACTATGGTGAGCCCCTTGGTTCCTCTTATATAATCGCCTTA  150

seq1  TCCATGCCCCCAACTTCTACACATTTTCCTCTGTCCACACTTTACTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCCCCCAACTTCTACACATTTTCCTCTGTCCACACTTTACTTTTC  200

seq1  TTCACTAACTGCTTCTGGGATTGATTACAGACCCCTATTTCAAAGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAACTGCTTCTGGGATTGATTACAGACCCCTATTTCAAAGAAAGA  250

seq1  GACTAGGATTAACTCCTCGACCTTACTGGGGTAGCAAACGAACTTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGATTAACTCCTCGACCTTACTGGGGTAGCAAACGAACTTTCTGG  300

seq1  ATTGTACATTTTAGGAAGCAGGATGGGAGTGGGGCTGGGGAGAGGGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATTTTAGGAAGCAGGATGGGAGTGGGGCTGGGGAGAGGGCTAG  350

seq1  GGTTAACAAAAATACCAGAAGGATCTAGCAACACTCACTATTAATTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACAAAAATACCAGAAGGATCTAGCAACACTCACTATTAATTTCTT  400

seq1  TTCTTGTGGCTCAAAAGGGCTATGAAAAAGCAGCGTAGTCTGTCTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGCTCAAAAGGGCTATGAAAAAGCAGCGTAGTCTGTCTTACAT  450

seq1  GTTCTCAGGATAAAGGCTGATGAAGCCATGGCAGTCTTTTTCCATTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGGATAAAGGCTGATGAAGCCATGGCAGTCTTTTTCCATTAATT  500

seq1  CTTAGCGAAGTCAGCCATCTCCCCTGATTCTCCACAACTCAAGCTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGAAGTCAGCCATCTCCCCTGATTCTCCACAACTCAAGCTCTTTG  550

seq1  AATAACATTTAGCAGGATAAACATTTTCCTCCCTGTGGTAGAATGTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTTAGCAGGATAAACATTTTCCTCCCTGTGGTAGAATGTGGTG  600

seq1  AGGAATAATAGTAATTTACAACACTCTAATCCAAGCAATTAGTTGTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATAGTAATTTACAACACTCTAATCCAAGCAATTAGTTGTAGCA  650

seq1  TTTCATTAAAATGCAAGTATTCTCTGAGTAGAAACTTGGGGGGCCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAAATGCAAGTATTCTCTGAGTAGAAACTTGGGGGGCCAAGGG  700

seq1  AGGACTTGGTGGGTCTTGTGTAGTCACAAACATGCTGCTGTCTTAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGGTGGGTCTTGTGTAGTCACAAACATGCTGCTGTCTTAGATGG  750

seq1  GTGGAGAACATTTCTGTTTGCTCTCCTCACTCAGCCTGGCACACAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAACATTTCTGTTTGCTCTCCTCACTCAGCCTGGCACACAGAACA  800

seq1  GCCTGGGCTAGACCGACTCTGCATTTAGCTTTAGATAGTGTTGACA-GGC  849
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  GCCTGGGCTAGACCGACTCTGCAATTAGCTTTAGATAGTGTTGACAGGGC  850

seq1  AAGGCTTACAGTGGAGAC-ACCCTAGATGGACACC-TGCTA-TTGTTCAG  896
      |||||||||||||||||| |||||||||||||||| ||||| ||||||||
seq2  AAGGCTTACAGTGGAGACAACCCTAGATGGACACCTTGCTATTTGTTCAG  900

seq1  TTTTCAACTATGTTTGAG-AGC-TTCTGAAAAGAAAATGCA--TGTTC--  940
      |||||||||||||||||| ||| |||||||||||||  |||   ||||  
seq2  TTTTCAACTATGTTTGAGAAGCTTTCTGAAAAGAAATGGCAATGGTTCCT  950

seq1  TTTTTCTGGAAAACTAAATCTTCAAC-TTGCTTG-CTGAAA-TTAAATCC  987
      ||||||| | ||||||| |||||||| ||||||| |||||| ||||||||
seq2  TTTTTCTTGGAAACTAATTCTTCAACTTTGCTTGCCTGAAATTTAAATCC  1000

seq1  ATATAT--GCATG-TATGTCTGTACATGCA-CACTAGTGTT-GTAAACAC  1032
      ||||||   |||| |||||||||||||||| |||||||||| |||||| |
seq2  ATATATTGCCATGTTATGTCTGTACATGCACCACTAGTGTTGGTAAAC-C  1049

seq1  ACA-CACACACA-CACACACCAGAG-CTGTTGGCCCTGGAGAATGTCAT  1078
      ||| ||  | || |||||| ||||| |||| | ||  ||||||||||||
seq2  ACAGCATTCTCATCACACATCAGAGCCTGTGGTCCTGGGAGAATGTCAT  1098

seq1: chr7_122241844_122243016
seq2: B6Ng01-333N20.g_67_1235 (reverse)

seq1  TTTCTGCTATGTTGCCGACTTTCTTCTCCCAAACTGA--GTGCATCTACT  48
      |||| |||||| |||||||||   |||||||||||||   ||||||||||
seq2  TTTC-GCTATG-TGCCGACTT--CTCTCCCAAACTGAAGTTGCATCTACT  46

seq1  CCTTTTTACACTCAAGCCACAAGTC-TTTCTCA-CACATGGACTTTTGAT  96
      |   || || ||| || ||| |||| ||| ||| ||||| ||||||||||
seq2  C--GTTGACCCTCCAG-CAC-AGTCTTTTTTCACCACAT-GACTTTTGAT  91

seq1  GTCTTCTTCTGGCCTTCTGCCCATATCAGTG-TCTTGGCGTTGAAC-AGT  144
      |||||||||||  ||||||||| |||||||| |||||||| ||||| |||
seq2  GTCTTCTTCTG--CTTCTGCCCGTATCAGTGTTCTTGGCG-TGAACAAGT  138

seq1  TGGGTAATTGCACTTCTTTGAGGAGCCATACCACCTCGCTCC-TTCATGT  193
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGT-ATTGCACTTCTTTGAGGAGCCATACCACCTCGCTCCTTTCATGT  187

seq1  TTCTTGTGGTTTTATCCTTGGGTGTGCAATCACTTGGTTTGTTATTTCTT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGTTTTATCCTTGGGTGTGCAATCACTTGGTTTGTTATTTCTT  237

seq1  CTGCCTTTTTAATTTAGTGTTTTCTTATTGAGTGG-CCTAATTGTGAAGG  292
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTGCCTTTTTAATTTAGTGTTTTCTTATTGAGTGGCCCTAATTGTGAAGG  287

seq1  CTCAGTTGACAAAATCACTCAGAGAAAAGTAAACAAAT-CCTCCTCCCCA  341
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAGTTGACAAAATCACTCAGAGAAAAGTAAACAAATCCCTCCTCCCCA  337

seq1  CCAATGCTCTGAGGCTGTGTTCAGCTTGGGGCACTATCATCCTTCTCTCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTCTGAGGCTGTGTTCAGCTTGGGGCACTATCATCCTTCTCTCC  387

seq1  CCATGTTCTAGTTAACCTCTTCCTTCCTTTTGGACTTCTGAAGCTCTTGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCTAGTTAACCTCTTCCTTCCTTTTGGACTTCTGAAGCTCTTGC  437

seq1  TTTGTTTTGCTTTGCTTTGCTATTCTCTTCTCTTTTCTCTTCTTTATTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGCTTTGCTTTGCTATTCTCTTCTCTTTTCTCTTCTTTATTTT  487

seq1  TCTTTTTATTTTTTATTCTGTCTCTCCCTTTAGCAAGTCACATGAAGGCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTTTTTATTCTGTCTCTCCCTTTAGCAAGTCACATGAAGGCA  537

seq1  ACTTCTAAGTCACTGTTTTACTCCAAAGCCTAGATTCCTTTAACTGGGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAGTCACTGTTTTACTCCAAAGCCTAGATTCCTTTAACTGGGGA  587

seq1  CGAGTTTCAGTACTAAAGAGGGCTGCGTTATTTATGGGCTATTATCCATG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCAGTACTAAAGAGGGCTGCGTTATTTATGGGCTATTATCCATG  637

seq1  AGTAGTTCTACAGATGTCTCTGCTGAAAACCTAAGTCTCCCTGCTCCCTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCTACAGATGTCTCTGCTGAAAACCTAAGTCTCCCTGCTCCCTT  687

seq1  TGAGGTTTCTGGAACTCTCCTTGGAATTTCCATTTCTTATCAGTCACTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTCTGGAACTCTCCTTGGAATTTCCATTTCTTATCAGTCACTCT  737

seq1  GTTCTTGTTTCTTTATTTTTTACCCTTCTGAGAGTGTATCTAGCTCAAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTTTCTTTATTTTTTACCCTTCTGAGAGTGTATCTAGCTCAAGT  787

seq1  CAGACTGGAGCTCCTTTTACTCTTAGTACCCTGGCTACTCCATCTTGATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGAGCTCCTTTTACTCTTAGTACCCTGGCTACTCCATCTTGATT  837

seq1  ATCCTGACAGCTTACCATTCTAGTATTTTGTCTTCCAGGAAAATGAAACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGCTTACCATTCTAGTATTTTGTCTTCCAGGAAAATGAAACT  887

seq1  TCCATAAACATTATACTATCGTTTTCTGCCCACTGGCTATGTTCCACATT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAACATTATACTATCGTTTTCTGCCCACTGGCTATGTTCCACATT  937

seq1  CTGAACTGGAAAATGCCCCCCAGAGGAAAAGAAATGGTGATTAGGGGACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGGAAAATGCCCCCCAGAGGAAAAGAAATGGTGATTAGGGGACT  987

seq1  TTAATGCGTTTCTCTCCTCTTAGAGGCCATAGCCACCAAGGTCCTGGCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCGTTTCTCTCCTCTTAGAGGCCATAGCCACCAAGGTCCTGGCTG  1037

seq1  CCCTGGCTCTTCTCTCCTGCTTTCCGTAAGTTACGTTTCTTTTGTGTGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTCTTCTCTCCTGCTTTCCGTAAGTTACGTTTCTTTTGTGTGTG  1087

seq1  CATGTCTAACCAGTCTTTGAAGATATTCTTCCTAAGCAGAGTTATAGCAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAACCAGTCTTTGAAGATATTCTTCCTAAGCAGAGTTATAGCAG  1137

seq1  AGACTCTTCTATCATAACCAGAAGAAGAATTC  1173
      ||||||||||||||||||||||||||||||||
seq2  AGACTCTTCTATCATAACCAGAAGAAGAATTC  1169