BAC Information

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BAC

Clone NameB6Ng01-334C04
Chromosome7 (Build37)
Map Location 7,650,196 - 7,812,113
singlet/doubletdoublet
Overlap geneLOC665485, EG625353, Vmn2r-ps40
Upstream genePeg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636
Downstream geneVmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334C04.bB6Ng01-334C04.g
ACCGA119715GA119716
length1,2271,134
definitionB6Ng01-334C04.b B6Ng01-334C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,810,857 - 7,812,113)(7,650,196 - 7,651,318)
sequence
gaattcaaatattaacgtgactaaatattttttggaaaatggagtgactt
tttattttattggaaataaagaacaaagcatggcatattttctgggtctt
gttgagcctttaaactcaatctttaccatgtaaattaactgtggatatgt
gaagaatgtatgatttcagatagagctggattacctatacttgagatttg
atctgtttatagatcttcaagataatggaagcacaggtcttgtttagata
ttactatcacttctgtaacatagtccacactgtacatggtctgtggatct
cagtgactgtaaacatgagtctgcctctgcatgacttggactgtgtaata
aagtgtcctgtatgtcctcagtagctccagttttgctatttctggatgtc
ttactgtgaataatgtgatacaaaccactgacatcatttctaactgtgtt
cacataagcagattgttgaaactttccagggaccaaatttgaacacaggg
gcttccttccacagattcacaaacatgactgatatcatggagactgagaa
tgaattatcctcctaagtatttacctacatgtgtttattacatgggctgt
ggacaccagttgcagagccccagggaagaaagtatttaagtttcttcagg
gctcaggagaaacctaaaaataaaatgagtcatgaatatgcaataaacct
caccattgcacaaagaaataaatgcaaggagaaatttgatgtgctgatat
gcatgactcatcacaatccacactgcccagatttaacacaggaaaaatat
gttcactttgatgggagtcttcttcttgcttaacattccacttttcatgg
ccaactttattcatcccaggtgcttttggagaataaatttgaatgaaatt
cagatgaatatttgggattaacttgtgctttcatcctggcagtagttcag
aaacctattgagaaagattatttcaccaagactctgaatttcctgtaagt
aaatttgagtttcaaattgaaatgacaacttcagtacttctgagtgctcg
agatattagtcaaattctttagtcttctgtcctgtgctagtctgacacca
agacactactttcgtacatttcaactactttctctttaatgaattcagtg
gagtttgatttcttcaggtgctcgaattaaaggttggagccttagaataa
gaaatctcaatgaatccttaacaaaag
gaattcaggaaatggggtaacatttgaaatataaataaataaaataaata
caaataaaacaaaggggagggcagggtgaaaatatggcaagagcctgaga
aacaggacgtttgctgtgagaatgcctctcctaaaaatggtagaaatata
tcaatgatgtctgatcaattaggtacctaaaaaaattggaaaaggtgatg
ctgattgacatgggaacatggaagtgtttaactttatgaaaactcaacaa
tatgcagagaactatagacaaccaaggaatgctgaaatagggaaagataa
tctacacaagggaggagattttcagttggtaatgcaacaccaagagttca
gccctgaagtatttatacatacaagttatgtactcagtaattttaattta
aatatttagaacattcataaatgtacactatgaatatgaaagtgtttgag
gagtgtgcatgggaatgattgaagtgttgaatgaaaaggggaagtgatat
aattatatttaaatcttaaaagtaaaacgtatttcttaaacaagttagaa
aaaaatattttcccagaatactttcatgttattattatgaaattttttat
tagattatactaagcgttctaatgatttctattgcttcacatgacagcaa
gtttttccttttactcataattcattagaaattaattctgacatgtagta
ctatgttcctttgatgagtattttaaatttggggaggttagatgtttcaa
agttaggaaacaaattgagggcaactgtcttagttagggttttactgctg
tgaacagacaccatgaccaaagtaaatcttataaaaaaaaaccacattta
cttggggctggcttacaggttcagaggttcagtccattataatcaagggg
gagcatggcagcatccaggcagcatggcacagacagagctgagagttcta
catcttcatccaaagctgctagtgaagactgactcagtaactgggtgaga
gtcttagtccacactcacagtgaccacactactcaacagtcacaatctat
caagaagctacacctctagtggtgccactcctgtcagattatacaaccat
ctaattccactccctggactctatagacttgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7810857_7812113
seq2: B6Ng01-334C04.b_48_1274 (reverse)

seq1  CTTTATGTTAAGGATCAATGTAGATATTCCTTTATTCCTAAGCTTCCAAC  50
      |||| ||||||||||  ||  |||| |||  ||||| |||||  ||||||
seq2  CTTT-TGTTAAGGATTCATTGAGAT-TTC--TTATT-CTAAGGCTCCAAC  45

seq1  CTTTAAATCAGAAGCCACCTGAAAGAAAACCAAAACCTCCACTGGATTCA  100
      |||||| || ||   |||||| |||||| |   || |||||||| |||||
seq2  CTTTAATTC-GA--GCACCTG-AAGAAATC---AAACTCCACTGAATTCA  88

seq1  TTAAAAGGAGAAAGTAGGTTTGAAAATGTATAGGAATTAAGGTTGGTTCT  150
      |||||  ||||||||||  ||| ||||||      |  || || |  |||
seq2  TTAAA--GAGAAAGTAG--TTG-AAATGT------ACGAAAGTAGTGTCT  127

seq1  TGGTGTTCAGACTTAGCAACAGGACAGAAGACTAAAGAATTTGACTAATA  200
      ||||| |||||| |||| ||||||||||||||||||||||||||||||||
seq2  TGGTG-TCAGAC-TAGC-ACAGGACAGAAGACTAAAGAATTTGACTAATA  174

seq1  TCCTCGGAGCACTCAAGAAGTACTGAAGTTGTCATTTCAATTTGAAACTC  250
      | ||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  T-CTC-GAGCACTC-AGAAGTACTGAAGTTGTCATTTCAATTTGAAACTC  221

seq1  AAATTTACTTACAGGAAATTCAGAGTCTTGGTGAAATAATCTTTCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTTACAGGAAATTCAGAGTCTTGGTGAAATAATCTTTCTCAAT  271

seq1  AGGTTTCTGAACTACTGCCAGGATGAAAGCACAAGTTAATCCCAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGAACTACTGCCAGGATGAAAGCACAAGTTAATCCCAAATATT  321

seq1  CATCCTGAATTTCATTCAAATTTATTCTCCAAAAGCACCTGGGATGAATA  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-CTGAATTTCATTCAAATTTATTCTCCAAAAGCACCTGGGATGAATA  370

seq1  AAGTTGGCCATGAAAAGTGGAATGTTAAGCAAGAAGAAGACTCCCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCCATGAAAAGTGGAATGTTAAGCAAGAAGAAGACTCCCATCAA  420

seq1  AGTGAACATATTTTTCCTGTGTTAAATCTGGGCAGTGTGGATTGTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACATATTTTTCCTGTGTTAAATCTGGGCAGTGTGGATTGTGATGA  470

seq1  GTCATGCATATCAGCACATCAAATTTCTCCTTGCATTTATTTCTTTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCATATCAGCACATCAAATTTCTCCTTGCATTTATTTCTTTGTGC  520

seq1  AATGGTGAGGTTTATTGCATATTCATGACTCATTTTATTTTTAGGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAGGTTTATTGCATATTCATGACTCATTTTATTTTTAGGTTTCT  570

seq1  CCTGAGCCCTGAAGAAACTTAAATACTTTCTTCCCTGGGGCTCTGCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCCCTGAAGAAACTTAAATACTTTCTTCCCTGGGGCTCTGCAACT  620

seq1  GGTGTCCACAGCCCATGTAATAAACACATGTAGGTAAATACTTAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCACAGCCCATGTAATAAACACATGTAGGTAAATACTTAGGAGGA  670

seq1  TAATTCATTCTCAGTCTCCATGATATCAGTCATGTTTGTGAATCTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTCTCAGTCTCCATGATATCAGTCATGTTTGTGAATCTGTGGA  720

seq1  AGGAAGCCCCTGTGTTCAAATTTGGTCCCTGGAAAGTTTCAACAATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCCTGTGTTCAAATTTGGTCCCTGGAAAGTTTCAACAATCTGC  770

seq1  TTATGTGAACACAGTTAGAAATGATGTCAGTGGTTTGTATCACATTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAACACAGTTAGAAATGATGTCAGTGGTTTGTATCACATTATTC  820

seq1  ACAGTAAGACATCCAGAAATAGCAAAACTGGAGCTACTGAGGACATACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGACATCCAGAAATAGCAAAACTGGAGCTACTGAGGACATACAG  870

seq1  GACACTTTATTACACAGTCCAAGTCATGCAGAGGCAGACTCATGTTTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTATTACACAGTCCAAGTCATGCAGAGGCAGACTCATGTTTACA  920

seq1  GTCACTGAGATCCACAGACCATGTACAGTGTGGACTATGTTACAGAAGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGATCCACAGACCATGTACAGTGTGGACTATGTTACAGAAGTG  970

seq1  ATAGTAATATCTAAACAAGACCTGTGCTTCCATTATCTTGAAGATCTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATATCTAAACAAGACCTGTGCTTCCATTATCTTGAAGATCTATA  1020

seq1  AACAGATCAAATCTCAAGTATAGGTAATCCAGCTCTATCTGAAATCATAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAAATCTCAAGTATAGGTAATCCAGCTCTATCTGAAATCATAC  1070

seq1  ATTCTTCACATATCCACAGTTAATTTACATGGTAAAGATTGAGTTTAAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCACATATCCACAGTTAATTTACATGGTAAAGATTGAGTTTAAAG  1120

seq1  GCTCAACAAGACCCAGAAAATATGCCATGCTTTGTTCTTTATTTCCAATA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACAAGACCCAGAAAATATGCCATGCTTTGTTCTTTATTTCCAATA  1170

seq1  AAATAAAAAGTCACTCCATTTTCCAAAAAATATTTAGTCACGTTAATATT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGTCACTCCATTTTCCAAAAAATATTTAGTCACGTTAATATT  1220

seq1  TGAATTC  1257
      |||||||
seq2  TGAATTC  1227

seq1: chr7_7650196_7651318
seq2: B6Ng01-334C04.g_94_1197

seq1  ATAAATAAATAAAATAAATACAAATAAAACAAAGGGGAGGGCAGGTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATAAATAAATAAAATAAATACAAATAAAACAAAGGGGAGGGCAGGGTGAA  50

seq1  AATATGGCAAGAGCCTGAGAAACAGGACGTTTGCTGTGAGAATGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCAAGAGCCTGAGAAACAGGACGTTTGCTGTGAGAATGCCTCTC  100

seq1  CTAAAAATGGTAGAAATATATCAATGATGTCTGATCAATTAGGTACCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATGGTAGAAATATATCAATGATGTCTGATCAATTAGGTACCTAA  150

seq1  AAAAATTGGAAAAGATGATGCTGATTGACATGGGAACATGGAAGTGTTTA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGAAAAGGTGATGCTGATTGACATGGGAACATGGAAGTGTTTA  200

seq1  ACTTTATGAAAACTCAACAATATGCAGAGAACTATAGACAACCAAGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGAAAACTCAACAATATGCAGAGAACTATAGACAACCAAGGAAT  250

seq1  GCTGAAATAGGGAAAGATAATCTACACAAGGGAGGAGATTTTCAGTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATAGGGAAAGATAATCTACACAAGGGAGGAGATTTTCAGTTGGT  300

seq1  AATGCAACACCAAGAGTTCAGCCCTGAAGTATTTATACATACAAGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACACCAAGAGTTCAGCCCTGAAGTATTTATACATACAAGTTATG  350

seq1  TACTCAGTAATTTTAATTTAAATATTTAGAACATTCATAAATGTACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTAATTTTAATTTAAATATTTAGAACATTCATAAATGTACACTA  400

seq1  TGAATATGAAAGTGTTTGAGGAGTGTGCATGGGAATGATTGAAGTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGAAAGTGTTTGAGGAGTGTGCATGGGAATGATTGAAGTGTTGA  450

seq1  ATGAAAAGGGGAAGTGATATAATTATATTTAAATCTTAAAAGTAAAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGGGAAGTGATATAATTATATTTAAATCTTAAAAGTAAAACGT  500

seq1  ATTTCTTAAACAAGTTAGAAAAAAATATTTTCCCAGAATACTTTCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAAACAAGTTAGAAAAAAATATTTTCCCAGAATACTTTCATGTT  550

seq1  ATTATTATGAAATTTTTTATTAGATTATACTAAGCGTTCTAATGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGAAATTTTTTATTAGATTATACTAAGCGTTCTAATGATTTCT  600

seq1  ATTGCTTCACATGACAGCAAGTTTTTCCTTTTACTCATAATTCATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCACATGACAGCAAGTTTTTCCTTTTACTCATAATTCATTAGAA  650

seq1  ATTAATTCTGACATGTAGTACTATGTTCCTTTGATGAGTATTTTAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTGACATGTAGTACTATGTTCCTTTGATGAGTATTTTAAATTT  700

seq1  GGGGAGGTTAGATGTTTCAAAGTTAGGAAACAAATTGAGGGCAACTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTTAGATGTTTCAAAGTTAGGAAACAAATTGAGGGCAACTGTCT  750

seq1  TAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGTAAATCTT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAAGTAAATCTT  800

seq1  ATAAAAAAAAA-CACATTTACTTGGGGCTGGCTTACAGGTTCAGAGGTTC  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAACCACATTTACTTGGGGCTGGCTTACAGGTTCAGAGGTTC  850

seq1  AGTCCATTATCATCAAGGGGGGAGCATGGCAGCATCCAGGCAGGCATGGC  899
      |||||||||| ||||| ||||||||||||||||||||||||| |||||||
seq2  AGTCCATTATAATCAA-GGGGGAGCATGGCAGCATCCAGGCA-GCATGGC  898

seq1  ACAGACAGAGCTGAGAGTTCTACATCTTCATCCAAAGGCTGCTAGTGGAA  949
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ACAGACAGAGCTGAGAGTTCTACATCTTCATCCAAA-GCTGCTAGT-GAA  946

seq1  GACTGACTTCCAGGTAACTGGGGTGAGAGTCTTAAGACCACACTCACAGT  999
      ||||||||  || |||||| ||||||||||||| || |||||||||||||
seq2  GACTGACT--CA-GTAACT-GGGTGAGAGTCTT-AGTCCACACTCACAGT  991

seq1  GACACAC-CTACTCCAACCAGGTAACATCTATTCCAAGAAGGCCACACCT  1048
      ||| ||| ||||||  | |||  |  ||||||  |||||| || ||||||
seq2  GAC-CACACTACTC--AACAGTCACAATCTAT--CAAGAA-GCTACACCT  1035

seq1  CTAAGTGGTGCCACTCCCTGGTCCAAGATTATACAAACCATCATATTCCA  1098
      || ||||||||||||||   |||  ||||||||| |||||||  ||||||
seq2  CT-AGTGGTGCCACTCC--TGTC--AGATTATAC-AACCATCTAATTCCA  1079

seq1  CTCCCTGGGACAC-ATAGACTTGTTC  1123
      |||||| |||| | ||||||||||||
seq2  CTCCCT-GGACTCTATAGACTTGTTC  1104