BAC Information

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BAC

Clone NameB6Ng01-335K16
Chromosome7 (Build37)
Map Location 137,511,506 - 137,591,739
singlet/doubletdoublet
Overlap geneAte1
Upstream genePpapdc1a, Brwd2, LOC100043150, Fgfr2, LOC546005
Downstream geneLOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335K16.bB6Ng01-335K16.g
ACCGA120819GA120820
length1,1251,179
definitionB6Ng01-335K16.b B6Ng01-335K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,590,606 - 137,591,739)(137,511,506 - 137,512,687)
sequence
gaattcatctcaaatctgcctcctttgtgaaatcttgctgcccttctgac
tggagtgtattgttcccattgcagtgtatgttctgatcccagtgctgatg
gctttgagttaggtactttcccatctgtttcattagattctcagcttctg
gacagtagagctagctctgctttatagtaaatgttcaggatctctttaga
tgtataagtatagatacatggctaatgagtcatttggtcactggttaagg
gaaatgcatatctgtgtctgatagttgcattgtttggcatttctacaggt
tatcttattttggtagtattaaggacaagttcactttgagatgaagaggg
atttctttcttttttttttattggatattttatttacatttcaaatgttt
ttcccttttcaggtctccccttcagaaaccccctatcccatccccacttc
ccctgcctctatgagggcactctcccacctacccactcccatcttactgc
cctgacatccccctatacaggagcattgaacactctcagacctgagggcc
tctcctcccactgatgtctgtctgacaaggccattgaagaggggtttctt
aatgaaaacactattgtgtttgaattatcagagagaggcaagctgtgctt
gcatttgtggtcttcagatttttctcagacatcataattaatttagaaca
tttataattgtgagttataatttattaaattactttagaaatatttctta
gtatatttatactacttctgttaacataaacaataaactgaacacctggg
actgaatatcttaaaaatatcacatttccaggtgtagtggctggcacatg
cctgtaattcttgcttttaggaggtccaggcaggaggaccaggaggatca
gcataagaccatctgtagtgggttattcctgggttgtcaacttgactata
ttggaatgaactacaatccagaattggaaaggctcaccagtgaccttatc
tggaggctgagatcctatctggatcttggtatggagatcttgagcatagt
tgctatggattccagaagatgatctcgagttttaacgaacacacctttat
ctgctgcgtcttcatctgggattaa
gaattcccccaagagtaggccggaaagaaatacattagctaattagagat
gatgtggacgttgcttggtcattttgttggccaactttcctgttgccctc
tctttctagatagattctttggacggggttggtgtgtggagcataagtat
ggcttcttttccttcatctttaaaaaataccctttaactgagaatggcat
tgttgcctgcgtcttttccctccacagggccagaacaaggcggggcatac
gaagctccagcctcctcctgggagatgcccagaacttagaaactttagaa
agcctgtcctcaggccctcatttcataaccatcaaaactcattgtttcct
tcgcatttctctttttagccatgcaggcaccatggggctgattcttagga
tgacccagctaaggagaaatcactatctccctgggtttgcaaatgagctt
gtgagggaatttaaaacagtccaagagagggacactcgagctcaggggac
cccagaagtgtctggtgggtcccggcaacactcagccagggttagtagaa
atactgatttcatgagagggcagaagagggttttattgtacttccaaccc
caaatcccaacaggcagaggtctctctattttattttgctttgttgaagg
actccaccatatttcctattcaccccttcatcctgtctcggtgctgaacc
tgggaccccctcctgccccgtttagcctgctgtctcctttaggaggggcc
gcagagaaggttccgtgtcagaatctctcacctctggacctgcaagggat
ggaaagtaactgaagtctgtgttaattgcattacggctgtggcgtctttt
ctaatgaaatggtggctttctccatggcaacggtgattagtacaagcaga
atggtgggtcgtccccagcctggctgcctgggaagtgactaccacttcac
agaacatttcagtccagaaagacgtttactgtgcacagtttgcctaagct
gactgctcacgctgcattcccacagccttattctctcccttccagctgag
cgtcacagacttgtgacccttgggttgggggggtgggtacaagctgctta
gaagctgaagttccttggacaagaagaagctttatctcttgttaagggag
tgggagcaacccctcagtatttgccagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_137590606_137591739
seq2: B6Ng01-335K16.b_46_1170 (reverse)

seq1  TTAATCCCAGATGAAAGGCGCAGGCCAGATTAAAGGTGTGTTCCTT-AAA  49
      ||||||||||||| ||| |||||  |||| ||||||||||||| || |||
seq2  TTAATCCCAGATG-AAGACGCAG--CAGA-TAAAGGTGTGTTCGTTAAAA  46

seq1  CTCGGAGATTCAATCTTCTGGAATCCATAGCCACTATGGCTCAAGATCTC  99
      ||| |||||   ||||||||||||||||||| ||||| ||||||||||||
seq2  CTC-GAGAT--CATCTTCTGGAATCCATAGCAACTAT-GCTCAAGATCTC  92

seq1  CATACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTG  149
      ||||||||||||||||| ||||||||  ||||||||||||| ||||||||
seq2  CATACCAAGATCCAGAT-AGGATCTC--AGCCTCCAGATAA-GGTCACTG  138

seq1  GTGAGCC-TTCCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTT  198
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAGCCTTTCCAATTCTGGATTGTAGTTCATTCC-AATATAGTCAAGTT  187

seq1  GACAA-CCAGGAATAA-CCACTACAGATGGTCTTATGCTGATCCTCCTGG  246
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GACAACCCAGGAATAACCCACTACAGATGGTCTTATGCTGATCCTCCTGG  237

seq1  TCCTCCTGCCTGGACCTCCTAAAAGCAAGAATTACAGGCATGTGCCAGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCCTGGACCTCCTAAAAGCAAGAATTACAGGCATGTGCCAGCC  287

seq1  ACTACACCTGGAAATGTGATATTTTTAAGATATTCAGTCCCAGGTGTTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACCTGGAAATGTGATATTTTTAAGATATTCAGTCCCAGGTGTTCA  337

seq1  GTTTATTGTTTATGTTAACAGAAGTAGTATAAATATACTAAGAAATATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGTTTATGTTAACAGAAGTAGTATAAATATACTAAGAAATATTT  387

seq1  CTAAAGTAATTTAATAAATTATAACTCACAATTATAAATGTTCTAAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAATTTAATAAATTATAACTCACAATTATAAATGTTCTAAATTA  437

seq1  ATTATGATGTCTGAGAAAAATCTGAAGACCACAAATGCAAGCACAGCTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGATGTCTGAGAAAAATCTGAAGACCACAAATGCAAGCACAGCTTG  487

seq1  CCTCTCTCTGATAATTCAAACACAATAGTGTTTTCATTAAGAAACCCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTGATAATTCAAACACAATAGTGTTTTCATTAAGAAACCCCTC  537

seq1  TTCAATGGCCTTGTCAGACAGACATCAGTGGGAGGAGAGGCCCTCAGGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGCCTTGTCAGACAGACATCAGTGGGAGGAGAGGCCCTCAGGTC  587

seq1  TGAGAGTGTTCAATGCTCCTGTATAGGGGGATGTCAGGGCAGTAAGATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGTTCAATGCTCCTGTATAGGGGGATGTCAGGGCAGTAAGATGG  637

seq1  GAGTGGGTAGGTGGGAGAGTGCCCTCATAGAGGCAGGGGAAGTGGGGATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTAGGTGGGAGAGTGCCCTCATAGAGGCAGGGGAAGTGGGGATG  687

seq1  GGATAGGGGGTTTCTGAAGGGGAGACCTGAAAAGGGAAAAACATTTGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGGGGTTTCTGAAGGGGAGACCTGAAAAGGGAAAAACATTTGAAA  737

seq1  TGTAAATAAAATATCCAATAAAAAAAAAAGAAAGAAATCCCTCTTCATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAAAATATCCAATAAAAAAAAAAGAAAGAAATCCCTCTTCATCT  787

seq1  CAAAGTGAACTTGTCCTTAATACTACCAAAATAAGATAACCTGTAGAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAACTTGTCCTTAATACTACCAAAATAAGATAACCTGTAGAAAT  837

seq1  GCCAAACAATGCAACTATCAGACACAGATATGCATTTCCCTTAACCAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACAATGCAACTATCAGACACAGATATGCATTTCCCTTAACCAGTG  887

seq1  ACCAAATGACTCATTAGCCATGTATCTATACTTATACATCTAAAGAGATC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGACTCATTAGCCATGTATCTATACTTATACATCTAAAGAGATC  937

seq1  CTGAACATTTACTATAAAGCAGAGCTAGCTCTACTGTCCAGAAGCTGAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATTTACTATAAAGCAGAGCTAGCTCTACTGTCCAGAAGCTGAGA  987

seq1  ATCTAATGAAACAGATGGGAAAGTACCTAACTCAAAGCCATCAGCACTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATGAAACAGATGGGAAAGTACCTAACTCAAAGCCATCAGCACTGG  1037

seq1  GATCAGAACATACACTGCAATGGGAACAATACACTCCAGTCAGAAGGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAACATACACTGCAATGGGAACAATACACTCCAGTCAGAAGGGCA  1087

seq1  GCAAGATTTCACAAAGGAGGCAGATTTGAGATGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTCACAAAGGAGGCAGATTTGAGATGAATTC  1125

seq1: chr7_137511506_137512687
seq2: B6Ng01-335K16.g_64_1242

seq1  GAATTCCCCCAAGAGTAGGCCGGAAAGAAATACATTAGCTAATTAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCAAGAGTAGGCCGGAAAGAAATACATTAGCTAATTAGAGAT  50

seq1  GATGTGGACGTTGCTTGGTCATTTTGTTGGCCAACTTTCCTGTTGCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGACGTTGCTTGGTCATTTTGTTGGCCAACTTTCCTGTTGCCCTC  100

seq1  TCTTTCTAGATAGATTCTTTGGACGGGGTTGGTGTGTGGAGCATAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGATAGATTCTTTGGACGGGGTTGGTGTGTGGAGCATAAGTAT  150

seq1  GGCTTCTTTTCCTTCATCTTTAAAAAATACCCTTTAACTGAGAATGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTTTCCTTCATCTTTAAAAAATACCCTTTAACTGAGAATGGCAT  200

seq1  TGTTGCCTGCGTCTTTTCCCTCCACAGGGCCAGAACAAGGCGGGGCATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGCGTCTTTTCCCTCCACAGGGCCAGAACAAGGCGGGGCATAC  250

seq1  GAAGCTCCAGCCTCCTCCTGGGAGATGCCCAGAACTTAGAAACTTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCAGCCTCCTCCTGGGAGATGCCCAGAACTTAGAAACTTTAGAA  300

seq1  AGCCTGTCCTCAGGCCCTCATTTCATAACCATCAAAACTCATTGTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCCTCAGGCCCTCATTTCATAACCATCAAAACTCATTGTTTCCT  350

seq1  TCGCATTTCTCTTTTTAGCCATGCAGGCACCATGGGGCTGATTCTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATTTCTCTTTTTAGCCATGCAGGCACCATGGGGCTGATTCTTAGGA  400

seq1  TGACCCAGCTAAGGAGAAATCACTATCTCCCTGGGTTTGCAAATGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGCTAAGGAGAAATCACTATCTCCCTGGGTTTGCAAATGAGCTT  450

seq1  GTGAGGGAATTTAAAACAGTCCAAGAGAGGGACACTCGAGCTCAGGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATTTAAAACAGTCCAAGAGAGGGACACTCGAGCTCAGGGGAC  500

seq1  CCCAGAAGTGTCTGGTGGGTCCCGGCAACACTCAGCCAGGGTTAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGTGTCTGGTGGGTCCCGGCAACACTCAGCCAGGGTTAGTAGAA  550

seq1  ATACTGATTTCATGAGAGGGCAGAAGAGGGTTTTATTGTACTTCCAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTTCATGAGAGGGCAGAAGAGGGTTTTATTGTACTTCCAACCC  600

seq1  CAAATCCCAACAGGCAGAGGTCTCTCTATTTTATTTTGCTTTGTTGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAACAGGCAGAGGTCTCTCTATTTTATTTTGCTTTGTTGAAGG  650

seq1  ACTCCACCATATTTCCTATTCACCCCTTCATCCTGTCTCGGTGCTGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCATATTTCCTATTCACCCCTTCATCCTGTCTCGGTGCTGAACC  700

seq1  TGGGACCCCCTCCTGCCCCGTTTAGCCTGCTGTCTCCTTTAGGAGGGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCCCTCCTGCCCCGTTTAGCCTGCTGTCTCCTTTAGGAGGGGCC  750

seq1  GCAGAGAAGGTTCCGTGTCAGAATCTCTCACCTCTGGACCTGCAAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAGGTTCCGTGTCAGAATCTCTCACCTCTGGACCTGCAAGGGAT  800

seq1  GGAAAGTAACTGAAGTCTGTGTTAATTGCATTACGGCTGTGGCGTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAACTGAAGTCTGTGTTAATTGCATTACGGCTGTGGCGTCTTTT  850

seq1  CTAATGAAATGGTGGCTTTCTCCATGGCAACGGTGATTAGTACAAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAATGGTGGCTTTCTCCATGGCAACGGTGATTAGTACAAGCAGA  900

seq1  ATGGTGGGTCGTCCCCAGCCTGGCTGCCTGGGAAGTGACTACCACTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGTCGTCCCCAGCCTGGCTGCCTGGGAAGTGACTACCACTTCAC  950

seq1  AGAACAATTCAGTCCAGAAAGACGTTTACTGTGCACAGTTTGCCTAAGCT  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTCAGTCCAGAAAGACGTTTACTGTGCACAGTTTGCCTAAGCT  1000

seq1  GACTGCTCACGCTGCATTCCCCACAGCCCTATTCTCTCCCTCCCAGCTGG  1050
      |||||||||||||||||| ||||||||| |||||||||||| |||||| |
seq2  GACTGCTCACGCTGCATT-CCCACAGCCTTATTCTCTCCCTTCCAGCT-G  1048

seq1  AGCCGGTCACAGACTTGTGACCC-TGGGTT-GGGGGGTGGGACAAAGCTG  1098
      |||  |||||||||||||||||| |||||| ||||||||||   ||||||
seq2  AGC--GTCACAGACTTGTGACCCTTGGGTTGGGGGGGTGGGTACAAGCTG  1096

seq1  GCTAG-AGCTG-AGGTCCTGGGACAGAGAAGAAAGCTTTA-CTCTTGTTT  1145
        ||| ||||| || |||| ||||| ||||| |||||||| |||||| ||
seq2  CTTAGAAGCTGAAGTTCCTTGGACA-AGAAG-AAGCTTTATCTCTTG-TT  1143

seq1  AGGGGAGTGGGGAAGCAACCCCTCAGTATTTG-CAGCT  1182
      | |||||||||  ||||||||||||||||||| |||||
seq2  AAGGGAGTGGG--AGCAACCCCTCAGTATTTGCCAGCT  1179