BAC Information

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BAC

Clone NameB6Ng01-335L21
Chromosome7 (Build37)
Map Location 12,784,796 - 12,785,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3
Downstream geneLOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335L21.bB6Ng01-335L21.g
ACCGA120872GA120873
length1,1761,000
definitionB6Ng01-335L21.b B6Ng01-335L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgaccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tgtactcgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccacctgaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagtagagtcacgccgagatatttatattattt
gtggctattgagaaggtgttgtttccctaatttctttctcagcctgttta
ttctttgtgtagagaaagcattgacttgtttgagtttatttttatattca
gctacttcaccgagctgtttatcaaggtaggagttccttggtggattttt
agggttcacttataatagcaatcatttcacctgcaagtaattgactctct
tccaagtggtatccccctgagtatct
gaattcatctttccttccttccttcttccttccttccttccttccttcct
ttctttctttcttttttttcttttttctttttcttttttttttttttttt
tgttcatctgtgttggaatccacagggcttgctgtagtaacaggattact
ggactctggtggagccacattgacctggctgttattgtgttttactctgt
ggccaaggcatctgggattgggaaaattgtaattctatgtgttagcatca
ggccttttctttgttcggtagatttttttttaaactcagcttctgtatca
tccctgggtcttaggagggtgtggtagttgtgtattttcttgtagtaagt
tcttctggagttctgataggtgtggctactggtggttcagggtaaaatgt
atttctgggtgttgggagatgatccttataaatgggaattgtttataggt
tggatttgagaaggtccacagaagggaggaaataatgacatttcaccagg
acgatttttcctctaggaatgagggaagtgagtgaggagaagccacagta
gaaggtcttctacagaattgggaatgagactgagagtctctaaaagttgg
tggccaactatcctgctgtattcagcagtgaacaacaaaacaaaatgcct
caaatgatggatgtagaaggaaatgaatgacagtgtacgttgttctctga
aacataaaatgaacaccatgccacagtgtacgttgttctctgaacataaa
atgaacaccatgccaaacaagcacccacactcacatattgacacatacca
cagatgcacaaaagattaaaccaggaagatcagatttgtgatataattaa
tatcttattcacattctcatgcagtattatgttttttgagcaaggaattc
taatgctatttactcatagctccactttagtaccaactcaggaaggcatt
aatctgatttcagtttgttgccataactcattgaactaacattatcattt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12784796_12785706
seq2: B6Ng01-335L21.g_155_1065

seq1  TTTTTTTTTTTTGTTCATCTGTGTTGGAATCCACAGGGCTTGCTGTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGTTCATCTGTGTTGGAATCCACAGGGCTTGCTGTAGTA  50

seq1  ACAGGATTACTGGACTCTGGTGGAGCCACATTGACCTGGCTGTTATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTACTGGACTCTGGTGGAGCCACATTGACCTGGCTGTTATTGTG  100

seq1  TTTTACTCTGTGGCCAAGGCATCTGGGATTGGGAAAATTGTAATTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTGTGGCCAAGGCATCTGGGATTGGGAAAATTGTAATTCTATG  150

seq1  TGTTAGCATCAGGCCTTTTCTTTGTTCGGTAGATTTTTTTTTAAACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCATCAGGCCTTTTCTTTGTTCGGTAGATTTTTTTTTAAACTCAG  200

seq1  CTTCTGTATCATCCCTGGGTCTTAGGAGGGTGTGGTAGTTGTGTATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATCATCCCTGGGTCTTAGGAGGGTGTGGTAGTTGTGTATTTTC  250

seq1  TTGTAGTAAGTTCTTCTGGAGTTCTGATAGGTGTGGCTACTGGTGGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTAAGTTCTTCTGGAGTTCTGATAGGTGTGGCTACTGGTGGTTCA  300

seq1  GGGTAAAATGTATTTCTGGGTGTTGGGAGATGATCCTTATAAATGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAATGTATTTCTGGGTGTTGGGAGATGATCCTTATAAATGGGAAT  350

seq1  TGTTTATAGGTTGGATTTGAGAAGGTCCACAGAAGGGAGGAAATAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGGTTGGATTTGAGAAGGTCCACAGAAGGGAGGAAATAATGAC  400

seq1  ATTTCACCAGGACGATTTTTCCTCTAGGAATGAGGGAAGTGAGTGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCAGGACGATTTTTCCTCTAGGAATGAGGGAAGTGAGTGAGGAG  450

seq1  AAGCCACAGTAGAAGGTCTTCTACAGAATTGGGAATGAGACTGAGAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGTAGAAGGTCTTCTACAGAATTGGGAATGAGACTGAGAGTCT  500

seq1  CTAAAAGTTGGTGGCCAACTATCCTGCTGTATTCAGCAGTGAACAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGTTGGTGGCCAACTATCCTGCTGTATTCAGCAGTGAACAACAAA  550

seq1  ACAAAATGCCTCAAATGATGGATGTAGAAGGAAATGAATGACAGTGTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGCCTCAAATGATGGATGTAGAAGGAAATGAATGACAGTGTACG  600

seq1  TTGTTCTCTG-AACATAAAATGAACACCATGCCACAGTGTACGTTGTTCT  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTGAAACATAAAATGAACACCATGCCACAGTGTACGTTGTTCT  650

seq1  CTGAACATAAAATGAACACCATGCCAAACAAGCACCCACACTCACATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATAAAATGAACACCATGCCAAACAAGCACCCACACTCACATATT  700

seq1  GACACATACCACAGATGCACAAAAGATTAAAACAAGAAGATCAGATTTG-  748
      ||||||||||||||||||||||||||||||| || |||||||||||||| 
seq2  GACACATACCACAGATGCACAAAAGATTAAACCAGGAAGATCAGATTTGT  750

seq1  GATAT-ATTTATATCTTATTCACATTCTAATGTAGTAATTAGGTTTTTTG  797
      ||||| ||| |||||||||||||||||| ||| ||| |||| ||||||||
seq2  GATATAATTAATATCTTATTCACATTCTCATGCAGT-ATTATGTTTTTTG  799

seq1  AGTCAAGGAATTACTAATGCTATTTACTCATAGCTCCACTTTAGGTACAA  847
      || ||||||||| |||||||||||||||||||||||||||||| |||| |
seq2  AG-CAAGGAATT-CTAATGCTATTTACTCATAGCTCCACTTTA-GTACCA  846

seq1  ACTCAGGAAGGCATTTATCTGATTTCAGTTTTGTTGCAATAA-TCTATGA  896
      ||||||||||||||| |||||||||||| |||||||| |||| ||  |||
seq2  ACTCAGGAAGGCATTAATCTGATTTCAG-TTTGTTGCCATAACTCATTGA  895

seq1  ACT-ACAATATCATTT  911
      ||| ||| ||||||||
seq2  ACTAACATTATCATTT  911