BAC Information

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BAC

Clone NameB6Ng01-338M04
Chromosome7 (Build37)
Map Location 94,282,112 - 94,396,846
singlet/doubletdoublet
Overlap geneLOC621477, Nox4
Upstream geneEG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
Downstream geneTyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338M04.bB6Ng01-338M04.g
ACCGA122954GA122955
length1,1721,061
definitionB6Ng01-338M04.b B6Ng01-338M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,282,112 - 94,283,299)(94,395,760 - 94,396,846)
sequence
gaattcctttttattaagagcgttaactgtattaccttacctcttttgaa
caatattaatatttaaattatacttctcagtacactgggcttaaaaggac
tgcatttcctcaattattaataattacttgcatcatatcttagtatggtc
atggtaccttccctagatttaatggaaaacatgccagtatttgtagtctt
tctcacaacattgctaaaaaaacatcctgttaaattatgagttaattact
cagaatgccagatgttcatggcagtaattctgatatgaaaatacatctgg
tatattacagaaatggcagctactgtttttttataggcatctggtgtttt
tgtctcaggtgtttcctcagaaattccttgaatggaattagtaaaatgat
aacaaccttgattttcacacaaaggtttggaatattcacttcaaatagaa
aatttgttttcttgttgcactctcttttcagaaacgcttcatacacagta
gcaaggaggtcacccagaaaaggtaaggtaacttggaaatgacaatttac
aaaacaatccctactatggtttacatagtatattactataatgagtcatg
gcacactaagaaattggaattgagttcagatgacctcagaggccagaaga
attaatacgatgtgggtaatctgacatgggttctatctgatgtgctttta
gagaagatcgcaaataacctggtttcattttattctgaactcatatatct
cagaaaggagactagtcactcgttggtccagtgaagccttatttatttgt
tatgaccaaaagctgcacagaccacacttactggtttactataaatctaa
tttatctaatctcatgttaagaactttctaagcacttttctctgaatgat
ctcttagaatactgtaatggttagcattattaactctataaagtctagaa
tcacctgtctgcctgcctgcctgtctgcctgtctgcctgctgctctctgt
ctgtttgtctgtctgtctgtgtcagttgtgtgtttttgttcaggtgtgta
gtttgtgaagatgtgatgtcctgtgcaagttacagattccaagtgtttca
ctggacatatttagggagttcagtctctctggattctagggactatatgc
agcaggcttgtagcattgcttt
gaattcagtctcctggtacaaagtaagatatcctggaggaccctgccatt
tataggatctagtaaggtagagatagaattagaagatgagatgagaaaca
gaacaaagagaaatatcaacatgaaataaaccaggacagagtttgtttga
ttctgtcctcagaccagaaccagacccggccaataacctatggcaaccag
ccaaggctacttagaaataaataacagctcactttgtgagaactgtcagt
aaaagaaaaccagtgctgacatcctctggacagacttgtgggaaggcaga
gagccttgataagtctagactaacagtctgtcatcagctggtcctctgag
agaagcaaactcttcagggcttgctcactggtgcagcttgggggggaaaa
aaaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagcagaagccagcaacttccctcagactctgatagcctggtct
gacaggttcatttacctcaatttaacagatactactacccttgctcctta
aagggccaaactcaagaagcttgactgctcaaagaaacacatgtttttta
agttgacagcaaatattactatgagaaatgggtgtactgacaaaatcctg
tagtagtttgttgccttaaacccactctaccaggtcatcccagattcact
tacgcccaacatttggtgaatgtagtagtattctggcccttggttgtaca
gcaggaaggttttccagaaaagtagaacgtttagggacagccaaatgagc
tagaccagtcaagagaaagaaaaaaacaagttaaaaaaaaaagaaaataa
tcatctgatagagccacacacagactcatctggtacatgcatttcagaag
cagaagcatgctcagtcagtagtgaaagctgctctgaagacactcactgc
tacccagaccctgcactgaataacgtgtgctatgatcacttaatcagcta
cactacttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_94282112_94283299
seq2: B6Ng01-338M04.b_45_1216

seq1  GAATTCCTTTTTATTAAGAGCGTTAACTGTATTACCTTACCTCTTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTATTAAGAGCGTTAACTGTATTACCTTACCTCTTTTGAA  50

seq1  CAATATTAATATTTAAATTATACTTCTCAGTACACTGGGCTTAAAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTAATATTTAAATTATACTTCTCAGTACACTGGGCTTAAAAGGAC  100

seq1  TGCATTTCCTCAATTATTAATAATTACTTGCATCATATCTTAGTATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCTCAATTATTAATAATTACTTGCATCATATCTTAGTATGGTC  150

seq1  ATGGTACCTTCCCTAGATTTAATGGAAAACATGCCAGTATTTGTAGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACCTTCCCTAGATTTAATGGAAAACATGCCAGTATTTGTAGTCTT  200

seq1  TCTCACAACATTGCTAAAAAAACATCCTGTTAAATTATGAGTTAATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAACATTGCTAAAAAAACATCCTGTTAAATTATGAGTTAATTACT  250

seq1  CAGAATGCCAGATGTTCATGGCAGTAATTCTGATATGAAAATACATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGCCAGATGTTCATGGCAGTAATTCTGATATGAAAATACATCTGG  300

seq1  TATATTACAGAAATGGCAGCTACTGTTTTTTTATAGGCATCTGGTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACAGAAATGGCAGCTACTGTTTTTTTATAGGCATCTGGTGTTTT  350

seq1  TGTCTCAGGTGTTTCCTCAGAAATTCCTTGAATGGAATTAGTAAAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGGTGTTTCCTCAGAAATTCCTTGAATGGAATTAGTAAAATGAT  400

seq1  AACAACCTTGATTTTCACACAAAGGTTTGGAATATTCACTTCAAATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTTGATTTTCACACAAAGGTTTGGAATATTCACTTCAAATAGAA  450

seq1  AATTTGTTTTCTTGTTGCACTCTCTTTTCAGAAACGCTTCATACACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTTCTTGTTGCACTCTCTTTTCAGAAACGCTTCATACACAGTA  500

seq1  GCAAGGAGGTCACCCAGAAAAGGTAAGGTAACTTGGAAATGACAATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGGTCACCCAGAAAAGGTAAGGTAACTTGGAAATGACAATTTAC  550

seq1  AAAACAATCCCTACTATGGTTTACATAGTATATTACTATAATGAGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCCCTACTATGGTTTACATAGTATATTACTATAATGAGTCATG  600

seq1  GCACACTAAGAAATTGGAATTGAGTTCAGATGACCTCAGAGGCCAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAAGAAATTGGAATTGAGTTCAGATGACCTCAGAGGCCAGAAGA  650

seq1  ATTAATACGATGTGGGTAATCTGACATGGGTTCTATCTGATGTGCTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATACGATGTGGGTAATCTGACATGGGTTCTATCTGATGTGCTTTTA  700

seq1  GAGAAGATCGCAAATAACCTGGTTTCATTTTATTCTGAACTCATATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATCGCAAATAACCTGGTTTCATTTTATTCTGAACTCATATATCT  750

seq1  CAGAAAGGAGACTAGTCACTCGTTGGTCCAGTGAAGCCTTATTTATTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGAGACTAGTCACTCGTTGGTCCAGTGAAGCCTTATTTATTTGT  800

seq1  TATGACCAAAAGCTGCACAGACCACACTTACTGGTTTACTATAAATCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCAAAAGCTGCACAGACCACACTTACTGGTTTACTATAAATCTAA  850

seq1  TTTATCTAATCTCATGTTAAGAACTTTCTAAGCACTTTTCTCTGAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAATCTCATGTTAAGAACTTTCTAAGCACTTTTCTCTGAATGAT  900

seq1  CTCTTAGAATACTGTAATGGTTAGCATTATTAACTCTATAAAGTCTAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAATACTGTAATGGTTAGCATTATTAACTCTATAAAGTCTAGAA  950

seq1  TCACCTGTCTGCCTGCCTGCCTGTCTGCCTGTCTGCCTGCCTGCCTCTCT  1000
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  TCACCTGTCTGCCTGCCTGCCTGTCTGCCTGTCTGCCTG-CTG-CTCTCT  998

seq1  GTCTGTTTGTCTGTCTGTTCTGTGTCAGGTTGTGTGTTTTTGTTCAGGTG  1050
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  GTCTGTTTGTCTGTCTG-TCTGTGTCA-GTTGTGTGTTTTTGTTCAGGTG  1046

seq1  TGTAGGTTTGTGAAGATGTGAATGT-CTGTGCAGTTTACAGAATCCACAG  1099
      |||| ||||||||||||||| |||| |||||||  ||||||| |||| ||
seq2  TGTA-GTTTGTGAAGATGTG-ATGTCCTGTGCAAGTTACAGATTCCA-AG  1093

seq1  GGTGTTCACTGGACAATATTAGGGAG-TCAGTTCTCTCCTGGGTTCTA-G  1147
       || |||||||||||   |||||||| |||| ||||| |||| ||||| |
seq2  TGT-TTCACTGGACATATTTAGGGAGTTCAG-TCTCT-CTGGATTCTAGG  1140

seq1  GACTCAAACTCATGCCAGCAGGCTTGTACAGCAATTGCTTT  1188
      ||||       ||| ||||||||||||  ||| ||||||||
seq2  GACT-----ATATG-CAGCAGGCTTGT--AGC-ATTGCTTT  1172

seq1: chr7_94395760_94396846
seq2: B6Ng01-338M04.g_67_1127 (reverse)

seq1  GGGAAGTAAGGTGTAGCTGATTAAGTGATCTATTAGCCACCAACCTTTAT  50
      ||||||||  |||||||||||||||||||| ||     | ||  | ||| 
seq2  GGGAAGTA--GTGTAGCTGATTAAGTGATC-AT-----AGCACACGTTA-  41

seq1  TTCAGTGCAGGGTCTGGGTAAGGCCAAGTGAGGTGTCCTCAGAGCAGCTT  100
      ||||||||||||||||||||  ||  ||||| ||||| ||||||||||||
seq2  TTCAGTGCAGGGTCTGGGTA--GC--AGTGA-GTGTCTTCAGAGCAGCTT  86

seq1  TTCCACTTACTGACTGAGCATGCTTTCTGCTTTCTGAAATTGCATGTACC  150
      |  ||| |||||||||||||||| |||||| |||||||| |||||||| |
seq2  T--CAC-TACTGACTGAGCATGC-TTCTGC-TTCTGAAA-TGCATGTA-C  129

seq1  CAGGTGAGTCTTGTGTGTGGCTTCTATCAGATGATTATTTTTCTTTTTTT  200
      ||| |||||| |||||||||| ||||||||||||||| ||||||||||||
seq2  CAGATGAGTC-TGTGTGTGGC-TCTATCAGATGATTA-TTTTCTTTTTTT  176

seq1  TTTAACTTTGTTTTTTTCTTTCTCTTTGACTGGTCTAGCTCATTTGGCTG  250
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTAAC-TTGTTTTTTTCTTTCTC-TTGACTGGTCTAGCTCATTTGGCTG  224

seq1  TCCCTAAACGTTCTACTTTTCTGGAAAACCTTCCTGCTGTACAACCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAACGTTCTACTTTTCTGGAAAACCTTCCTGCTGTACAACCAAGG  274

seq1  GCCAGAATACTACTACATTCACCAAATGTTGGGCGTAAGTGAATCTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAATACTACTACATTCACCAAATGTTGGGCGTAAGTGAATCTGGGA  324

seq1  TGACCTGGTAGAGTGGGTTTAAGGCAACAAACTACTACAGGATTTTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGTAGAGTGGGTTTAAGGCAACAAACTACTACAGGATTTTGTCA  374

seq1  GTACACCCATTTCTCATAGTAATATTTGCTGTCAACTTAAAAAACATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCCATTTCTCATAGTAATATTTGCTGTCAACTTAAAAAACATGTG  424

seq1  TTTCTTTGAGCAGTCAAGCTTCTTGAGTTTGGCCCTTTAAGGAGCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGCAGTCAAGCTTCTTGAGTTTGGCCCTTTAAGGAGCAAGGG  474

seq1  TAGTAGTATCTGTTAAATTGAGGTAAATGAACCTGTCAGACCAGGCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTATCTGTTAAATTGAGGTAAATGAACCTGTCAGACCAGGCTATC  524

seq1  AGAGTCTGAGGGAAGTTGCTGGCTTCTGCTTCTTCTTCTTCTTCTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGAGGGAAGTTGCTGGCTTCTGCTTCTTCTTCTTCTTCTTCTTC  574

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  624

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTTTTTTCCCCCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTTTTTTCCCCCCCAA  674

seq1  GCTGCACCAGTGAGCAAGCCCTGAAGAGTTTGCTTCTCTCAGAGGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCAGTGAGCAAGCCCTGAAGAGTTTGCTTCTCTCAGAGGACCAG  724

seq1  CTGATGACAGACTGTTAGTCTAGACTTATCAAGGCTCTCTGCCTTCCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACAGACTGTTAGTCTAGACTTATCAAGGCTCTCTGCCTTCCCAC  774

seq1  AAGTCTGTCCAGAGGATGTCAGCACTGGTTTTCTTTTACTGACAGTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTCCAGAGGATGTCAGCACTGGTTTTCTTTTACTGACAGTTCTC  824

seq1  ACAAAGTGAGCTGTTATTTATTTCTAAGTAGCCTTGGCTGGTTGCCATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGCTGTTATTTATTTCTAAGTAGCCTTGGCTGGTTGCCATAG  874

seq1  GTTATTGGCCGGGTCTGGTTCTGGTCTGAGGACAGAATCAAACAAACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGCCGGGTCTGGTTCTGGTCTGAGGACAGAATCAAACAAACTCT  924

seq1  GTCCTGGTTTATTTCATGTTGATATTTCTCTTTGTTCTGTTTCTCATCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGTTTATTTCATGTTGATATTTCTCTTTGTTCTGTTTCTCATCTC  974

seq1  ATCTTCTAATTCTATCTCTACCTTACTAGATCCTATAAATGGCAGGGTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAATTCTATCTCTACCTTACTAGATCCTATAAATGGCAGGGTCC  1024

seq1  TCCAGGATATCTTACTTTGTACCAGGAGACTGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATATCTTACTTTGTACCAGGAGACTGAATTC  1061