BAC Information

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BAC

Clone NameB6Ng01-339E18
Chromosome7 (Build37)
Map Location 126,688,726 - 126,812,467
singlet/doubletdoublet
Overlap geneAcsm2, Acsm1
Upstream geneTmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik
Downstream geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339E18.bB6Ng01-339E18.g
ACCGA123330GA123331
length1,098264
definitionB6Ng01-339E18.b B6Ng01-339E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,688,726 - 126,689,824)(126,812,204 - 126,812,467)
sequence
gaattccacacccctaaggcccttaccccataaaaacccctagctttcaa
gcctcatggccgacatccgttacctcctgtgtgggatacatgtcagtccg
gagctccgtaattaaacgtcctcatgtaattacatcaagatgtctgttcg
tgattcttgggtgcacgccgaatcgagagttgagtgggggtttccccact
aagttctatcacctctgtcctgtgcctctaagctcttctctcataccagc
aaaggatacatatatacttacttctcaacctccttcttgtttaaggacac
ctgtcacttcctgctacacaagggcatttggatgctcatggctttgtagc
cttccagcagccctggagaactaggtctacctgaaagggagactggaaat
gaaaagggacagggtgtgagagaagtatgaagccaagacaaaggttctga
tccaggctcaaagtttaatattcacctctgtgtttatacagggagagccc
acagacccattctttttttcagcttcattgaattgcaaagcaagctcagc
aggcaggcagtcaatttctcaaagctcctgtaggaaattgcaaatgctgt
gaggccagacaactcaagctaggtcttaaaacctttgtggcaagcactca
aggtttgttttagcctactcaaagctgggggaagggcacaattccccctt
ttttgttttttaaagatgagctggataaggacacaagatttacttgtttt
ccataatcccatctaggataaaaagtggccaggcaaccatgcttgtctta
gatcagtgtctatattgcttcttcttacccgctggggagaacaaacatag
cttttgatatatgtctctgtgctaggtagataggaactcaagaacactct
tacccatctctgactattggccttctatagcccactctttcccattcaga
ctaaatccatgaaggacatatgaatatgtactcaatgcatttcttcatat
cgggtggatactggcatgatgaatagctgagcttgctgaagcgatctatt
gtgaagcaaccaatctgtttagaatcatgggttcaaaggtttaaaagc
tttgtttagctctgtaccccatttttaatggggttatttgattttctgga
gtctagcttcttgagttctttatatatattggatattagtcccctatcag
atttaggattggtaaagatcctttcccaatctgttggttgcagaggttca
tttcttactgtgagagtatgcactttactacagaaatgccacacacaccc
tccattacagggacacaaaggtgtgtgtgtgtgtattgtttgtagaggag
agagaaggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_126688726_126689824
seq2: B6Ng01-339E18.b_49_1146

seq1  GAATTCCACACCCCTAAGGCCCTTACCCCATAAAAACCCCTAGCTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGGCCCTTACCCCATAAAAACCCCTAGCTTTCAA  50

seq1  GCCTCATGGCCGACATCCGTTACCTCCTGTGTGGGATACATGTCAGTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGGCCGACATCCGTTACCTCCTGTGTGGGATACATGTCAGTCCG  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACATCAAGATGTCTGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACATCAAGATGTCTGTTCG  150

seq1  TGATTCTTGGGTGCACGCCGAATCGAGAGTTGAGTGGGGGTTTCCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTTGGGTGCACGCCGAATCGAGAGTTGAGTGGGGGTTTCCCCACT  200

seq1  AAGTTCTATCACCTCTGTCCTGTGCCTCTAAGCTCTTCTCTCATACCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATCACCTCTGTCCTGTGCCTCTAAGCTCTTCTCTCATACCAGC  250

seq1  AAAGGATACATATATACTTACTTCTCAACCTCCTTCTTGTTTAAGGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATACATATATACTTACTTCTCAACCTCCTTCTTGTTTAAGGACAC  300

seq1  CTGTCACTTCCTGCTACACAAGGGCATTTGGATGCTCATGGCTTTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTTCCTGCTACACAAGGGCATTTGGATGCTCATGGCTTTGTAGC  350

seq1  CTTCCAGCAGCCCTGGAGAACTAGGTCTACCTGAAAGGGAGACTGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCAGCCCTGGAGAACTAGGTCTACCTGAAAGGGAGACTGGAAAT  400

seq1  GAAAAGGGACAGGGTGTGAGAGAAGTATGAAGCCAAGACAAAGGTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGACAGGGTGTGAGAGAAGTATGAAGCCAAGACAAAGGTTCTGA  450

seq1  TCCAGGCTCAAAGTTTAATATTCACCTCTGTGTTTATACAGGGAGAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTCAAAGTTTAATATTCACCTCTGTGTTTATACAGGGAGAGCCC  500

seq1  ACAGACCCATTCTTTTTTTCAGCTTCATTGAATTGCAAAGCAAGCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCATTCTTTTTTTCAGCTTCATTGAATTGCAAAGCAAGCTCAGC  550

seq1  AGGCAGGCAGTCAATTTCTCAAAGCTCCTGTAGGAAATTGCAAATGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGTCAATTTCTCAAAGCTCCTGTAGGAAATTGCAAATGCTGT  600

seq1  GAGGCCAGACAACTCAAGCTAGGTCTTAAAACCTTTGTGGCAAGCACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGACAACTCAAGCTAGGTCTTAAAACCTTTGTGGCAAGCACTCA  650

seq1  AGGTTTGTTTTAGCCTACTCAAAGCTGGGGGAAGGGCACAATTCCCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTTTAGCCTACTCAAAGCTGGGGGAAGGGCACAATTCCCCCTT  700

seq1  TTTTGTTTTTTAAAGATGAGCTGGATAAGGACACAAGATTTACTTGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTAAAGATGAGCTGGATAAGGACACAAGATTTACTTGTTTT  750

seq1  CCATAATCCCATCTAGGATAAAAAGTGGCCAGGCAACCATGCTTGTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCCCATCTAGGATAAAAAGTGGCCAGGCAACCATGCTTGTCTTA  800

seq1  GATCAGTGTCTATATTGCTTCTTCTTACCCGCTGGGGAGAACAAACATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGTCTATATTGCTTCTTCTTACCCGCTGGGGAGAACAAACATAG  850

seq1  CTTTTGATATATGTCTCTGTGCTAGGTAGATAGGAACTCAAGAACACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATATATGTCTCTGTGCTAGGTAGATAGGAACTCAAGAACACTCT  900

seq1  TACCCATCTCTGACTATTGGCCTTCTATAGCCCACTCTTTCCCATTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATCTCTGACTATTGGCCTTCTATAGCCCACTCTTTCCCATTCAGA  950

seq1  CTAAATCCATGAAGGACATATGAATATGTACTCAATGCATTTCTTCATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCCATGAAGGACATATGAATATGTACTCAATGCATTTCTTCATAT  1000

seq1  C-GGTGGATAACTGGCATGATGAATAGCTGAGCTTGCTGAAAGCGATCCT  1049
      | ||||||| ||||||||||||||||||||||||||||| ||||||||  
seq2  CGGGTGGAT-ACTGGCATGATGAATAGCTGAGCTTGCTG-AAGCGATCTA  1048

seq1  ATGTGAAAGCAACCAATCTGTTTAAGATACAT-GGTCCAAAGG-TTAAAA  1097
       |||| ||||||||||||||||| |||  ||| ||| |||||| ||||||
seq2  TTGTG-AAGCAACCAATCTGTTT-AGAATCATGGGTTCAAAGGTTTAAAA  1096

seq1  GC  1099
      ||
seq2  GC  1098

seq1: chr7_126812204_126812467
seq2: B6Ng01-339E18.g_74_337 (reverse)

seq1  TCCCCCCCTTCTCTCTCCTCTACAAACAATACACACACACACACCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCTTCTCTCTCCTCTACAAACAATACACACACACACACCTTTGT  50

seq1  GTCCCTGTAATGGAGGGTGTGTGTGGCATTTCTGTAGTAAAGTGCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTAATGGAGGGTGTGTGTGGCATTTCTGTAGTAAAGTGCATACT  100

seq1  CTCACAGTAAGAAATGAACCTCTGCAACCAACAGATTGGGAAAGGATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTAAGAAATGAACCTCTGCAACCAACAGATTGGGAAAGGATCTT  150

seq1  TACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATATAAAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATCCTAAATCTGATAGGGGACTAATATCCAATATATATAAAGAAC  200

seq1  TCAAGAAGCTAGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGCTAGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGTA  250

seq1  CAGAGCTAAACAAA  264
      ||||||||||||||
seq2  CAGAGCTAAACAAA  264