BAC Information

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BAC

Clone NameB6Ng01-339J17
Chromosome7 (Build37)
Map Location 21,696,753 - 21,697,914
singlet/doubletsinglet
Overlap geneEG667259
Upstream geneLOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262
Downstream geneLOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358, LOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339J17.bB6Ng01-339J17.g
ACCGA123557GA123558
length1,1571,163
definitionB6Ng01-339J17.b B6Ng01-339J17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattacacaattttattatttgcaatcttacatgttattctgat
acacataatttttaatatgttgctataacataaggaaattcaattaatag
tttttatgctgcatttatatattgttttatttttaatgatttagttatat
cccaattgaagcctcccctccctcctaattgtattgaattctgatgatgg
gatcacatgttcaaactactctctttcctgtctgtattcatatgcaagaa
ccaatgtgtgttaaaattgtgttattgtgttcttgagctactggaccaat
aaatttttagttgcattacaaaatttatctcaaggccagagtaataaaat
caggataaaattttatttgagttattatatatacattgttttccaggcaa
tttacctgtagtgtgatagaatagtgtctcacttatcaagtgaagaaatt
gtgtcaaatcaattggtaagtgtggacaataaaacagagaccctagaaga
gtagtgtccgacctaatcatcactccagggtcctgtaaagccctctccat
gtctgttcatgataaatccgtgaaaaccactgaggaagtggctcttcagc
tcctcttgctttgccagtttggggttgggactgtggccaatgtctttctg
tttgtccataatttctctccagtcttgactggttctaaacagagacccag
acaggtgattttaagccacatggctgtggccaatgccttgactctattcc
tcactatatttccaaacaacatgatggcttttgctcccaaaactcctcca
aatgaactcaaatgtaaattagaatccttcagtcgcctggtggcaagaag
cacaaacttgtgttccacctgtgtcctgagtgtccatcagtttgtcactc
tttttcctgttagtagaggtaaaggtaaacttatactcagagcaagtgtc
caaatttgggcgagttattcttgttacagttgttgggttttttcagtgtc
ttaaagtacatccacattccattagggtcactgggtccacagatacagac
aatacactgactctaaagcactggtcctgtcacttctggaatcatgtagg
cattgtccttggcagttgccattgattccaatcatgagacatcatgatct
ggaccag
gaattctcacccgagtaataccgaaaggctgagaaatacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
ttcatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcc
gaaaattggacatagtactactggaggatcccccaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttatgatagccagaagctggaaagaacccagat
ggccctcaacagaggaatggatacaaaagaggtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttacgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaacccagaaac
ttagtatagtgagatataaggtacaatatgtaaaacatatgaaactgaag
aagaatgaagaccaaagtatggacactttgctcattcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggtccatatagagacttccatatccagggatccatcccataatta
gcctccaagcgatgacaccattgcatacactagcaagcctttgttgcaag
gacggtgatatagctgtcccttgtgagactaggccgggcctagcaaacac
agaagtggatgctcacagtcaactattggatggatcacaggcccccaatg
gagaaaagtatccaaggagctaagagatctgcaaccctatcgtgaacaac
attatgaactaaccagtacctccagagcttctgactctagctgcatatgt
tatcaaaggatgacctagtcggccattcactgcaaaagagaggtccaatg
ttcaggcaacgttaatgcctagtacatggaacgctaggatccaaaaattg
aaatagtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21696753_21697914
seq2: B6Ng01-339J17.b_47_1203 (reverse)

seq1  CTGGTCCAGATCATGATG-CTCATGAATGTGGCATCATGGGCAAACTGC-  48
      |||||||||||||||||| |||||||   ||| ||||  ||| |||||| 
seq2  CTGGTCCAGATCATGATGTCTCATGA--TTGGAATCAATGGC-AACTGCC  47

seq1  -AAGACAATGCCTACAATGAATCCAGAAGTGGAACAGAACAAGTTGCTTT  97
       | |||||||||||| |||| ||||||||||  |||| || || ||| ||
seq2  AAGGACAATGCCTAC-ATGATTCCAGAAGTG--ACAGGACCAG-TGC-TT  92

seq1  TAGAGTCAGTGTTATTGTCTGTTATCTGTGGA-CCAGTGACCCTAATTGG  146
      ||||||||||| ||||||||| |||||||||| ||||||||||||| |||
seq2  TAGAGTCAGTG-TATTGTCTG-TATCTGTGGACCCAGTGACCCTAA-TGG  139

seq1  AATGTGGATGTTACTTAAGACACTGAAAAA--CCAACAACTGTAACAAGA  194
      |||||||||||   ||||||||||||||||  ||||||||||||||||||
seq2  AATGTGGATGTACTTTAAGACACTGAAAAAACCCAACAACTGTAACAAGA  189

seq1  ATAACTCGCCAAATTTTGGACACTTGCTCTGAGTATAAGTTTACCTTTAC  244
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  ATAACTCGCCCAAATTTGGACACTTGCTCTGAGTATAAGTTTACCTTTAC  239

seq1  CTCTACTAACAGGAAAAAGAGTGACAAACTGATGGACACTCAGGACACAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAACAGGAAAAAGAGTGACAAACTGATGGACACTCAGGACACAG  289

seq1  GTGGAACACAAGTTTGTGCTTCTTGCCACCAGGCGACTGAAGGATTCTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACACAAGTTTGTGCTTCTTGCCACCAGGCGACTGAAGGATTCTAA  339

seq1  TTTACATTTGAGTTCATTTGGAGGAGTTTTGGGAGCAAAAGCCATCATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTGAGTTCATTTGGAGGAGTTTTGGGAGCAAAAGCCATCATGT  389

seq1  TGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACAGCCATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGAAATATAGTGAGGAATAGAGTCAAGGCATTGGCCACAGCCATG  439

seq1  TGGCTTAAAATCACCTGTCTGGGTCTCTGTTTAGAACCAGTCAAGACTGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAAATCACCTGTCTGGGTCTCTGTTTAGAACCAGTCAAGACTGG  489

seq1  AGAGAAATTATGGACAAACAGAAAGACATTGGCCACAGTCCCAACCCCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTATGGACAAACAGAAAGACATTGGCCACAGTCCCAACCCCAA  539

seq1  ACTGGCAAAGCAAGAGGAGCTGAAGAGCCACTTCCTCAGTGGTTTTCACG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAAGCAAGAGGAGCTGAAGAGCCACTTCCTCAGTGGTTTTCACG  589

seq1  GATTTATCATGAACAGACATGGAGAGGGCTTTACAGGACCCTGGAGTGAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCATGAACAGACATGGAGAGGGCTTTACAGGACCCTGGAGTGAT  639

seq1  GATTAGGTCGGACACTACTCTTCTAGGGTCTCTGTTTTATTGTCCACACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTCGGACACTACTCTTCTAGGGTCTCTGTTTTATTGTCCACACT  689

seq1  TACCAATTGATTTGACACAATTTCTTCACTTGATAAGTGAGACACTATTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTGATTTGACACAATTTCTTCACTTGATAAGTGAGACACTATTC  739

seq1  TATCACACTACAGGTAAATTGCCTGGAAAACAATGTATATATAATAACTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACTACAGGTAAATTGCCTGGAAAACAATGTATATATAATAACTC  789

seq1  AAATAAAATTTTATCCTGATTTTATTACTCTGGCCTTGAGATAAATTTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATTTTATCCTGATTTTATTACTCTGGCCTTGAGATAAATTTTG  839

seq1  TAATGCAACTAAAAATTTATTGGTCCAGTAGCTCAAGAACACAATAACAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAACTAAAAATTTATTGGTCCAGTAGCTCAAGAACACAATAACAC  889

seq1  AATTTTAACACACATTGGTTCTTGCATATGAATACAGACAGGAAAGAGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACACACATTGGTTCTTGCATATGAATACAGACAGGAAAGAGAG  939

seq1  TAGTTTGAACATGTGATCCCATCATCAGAATTCAATACAATTAGGAGGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAACATGTGATCCCATCATCAGAATTCAATACAATTAGGAGGGA  989

seq1  GGGGAGGCTTCAATTGGGATATAACTAAATCATTAAAAATAAAACAATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCTTCAATTGGGATATAACTAAATCATTAAAAATAAAACAATAT  1039

seq1  ATAAATGCAGCATAAAAACTATTAATTGAATTTCCTTATGTTATAGCAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCAGCATAAAAACTATTAATTGAATTTCCTTATGTTATAGCAAC  1089

seq1  ATATTAAAAATTATGTGTATCAGAATAACATGTAAGATTGCAAATAATAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAATTATGTGTATCAGAATAACATGTAAGATTGCAAATAATAA  1139

seq1  AATTGTGTAATTGAATTC  1162
      ||||||||||||||||||
seq2  AATTGTGTAATTGAATTC  1157