BAC Information

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BAC

Clone NameB6Ng01-344E16
Chromosome7 (Build37)
Map Location 51,758,161 - 51,897,013
singlet/doubletdoublet
Overlap geneMybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
Upstream gene4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik
Downstream gene1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344E16.bB6Ng01-344E16.g
ACCGA126822GA126823
length1,0541,115
definitionB6Ng01-344E16.b B6Ng01-344E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,895,959 - 51,897,013)(51,758,161 - 51,759,273)
sequence
gaattcttgattctcctccctcagactctcagatactgggttggcaggta
tgtgccaccatgtctgactctggtgcctttttaatgcatttctttctagg
cttctcttttttcttctgtggggccaagagcagagtaagctttccctccg
tggagctgacggatgcctgggaacgtggcttgattcaggctttaattcag
agtagaaagggaaacacgcctcccacgcagccctggcgtgctccgccgca
aacatccatctatttaacgtgctagtgcagaggtgtgctagttgttcctg
ctgaaaatgtgcatcacccaaggcccagaggcacaggcctcttaacccag
cgcctggttcgctcaggatgctcctcccagaaagggccacctccacctct
ttcccccaacggaggggtccgatgtccctccccactaacccctgtcacct
gctctctccctcagctgcccagaagctttgccgcctcttgggactcggag
tgaccgacttctccagagcccttctcacaccccgcatcaaagtgggccga
gattatgttcagaaagcacaaaccaaggagcaggtaggcgggattcagcg
gtaggcgggattcagtggtaggcgggattcagtggtaggcgggattcagt
ggtaggcgggatcaagccctgtgagggcaggaaggactggcttacggttt
gtgatcctgggacttttaaatattattattacaattatttgtttatttgt
tgggggaggggcactgccacagcatgcaggctggcaccagagcaccaaca
gcagttagttttgtccttctaccacgtgggtcctggggattgaactcagg
tcgtcagcttggcagcgagctcctttatcttcagaaatcctctttactag
gtctttaagcagcgttccccatctctcacactcagcaaccttgcctgccc
ttattctatcaccaggctgggggcgggtgagggtgagcaatatggaaaac
acagatcaagctggaagttcgcttccacagcaagtgctgcctcacagcca
cgtg
gaattcactctgtagcataggttggcttcaaactcacatctcctagatca
gcttgagcattcttgggtactggaatgacagatgtgcagcacaccccaga
cagtttaaaagtcattttaaatcccaaatggggatgctctgagaacctgc
cagctgtcagaagtcagcgggagtctgccgtgaggatgcatctgagctga
cttagtcacccacaagaagaccccagaatagagggtggctcagcctgact
ccagaatgcagccagtgggagggggaggcggggtgctcccagaactgtcc
ctgaggggctgaagatcctgtttgctaagctgtctcagggccagggacat
cagcattgtcaagtgtctccagatcaagcaggggcatgctaatgtgtact
ctgggccacctgatctgcctccttccacaatgtcttggggactgaatcca
gcaaaggagatgaggaagttttcttggaagatggttcagcatatgccaga
gaccaagagtagggacatatgtagccactgtagtcccaccaagacacacg
acaccactgtggtcccaccaagacacgcgacaccgaattccaggctggaa
agactgtggtgatggtgggggagtttgacgagtaggggagcgctagctca
actctgattccaggggcgaaggacaggaggaggcttgacagaggagggat
tgcaggtggggcacaagctagggctggtgctctccaaccccagggccttt
gcatgacctgtattgccttcttgcctggggcatctgggtaggttcgccag
gggccctggattagggtcagtcagtgtgggaccattcccttctcacctcg
gacatccagttttgcatttcagccagggcttcccccagctcaattaaagg
cgcggcagggaataaggttcctgcatcaaggttgacggtcaggcggatgt
ttcagtgtcagattgccctggttagtggttatgaggatttgggatcttca
tggatttccatcttgttcttcatcacactactttggctaggtaagggaac
agggcaaagctgtaccttaaaggaatgtcttgaacgaaccatgacaccat
ctgcatggtgtacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51895959_51897013
seq2: B6Ng01-344E16.b_48_1101 (reverse)

seq1  CACGTGCTTGTGAGGCCAGCACTTGCTGTGG-AGCGACCTCCCAGCCTTG  49
      ||||||  ||||||| ||||||||||||||| ||||| || |||| ||||
seq2  CACGTGGCTGTGAGG-CAGCACTTGCTGTGGAAGCGAACTTCCAG-CTTG  48

seq1  ATCTGTGTTTTCATTATTGCTCACCCTCACCCCGCCCCCAGCCTGGTGAT  99
      ||||||||||||  ||||||||||||||| ||||||||||||||||||||
seq2  ATCTGTGTTTTCCATATTGCTCACCCTCA-CCCGCCCCCAGCCTGGTGAT  97

seq1  AGAATAAGGGCAGGCAAGGTTGCTGAGTGTGAGAGATGGGGAACGCTGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGGCAGGCAAGGTTGCTGAGTGTGAGAGATGGGGAACGCTGCT  147

seq1  TAAAGACCTAGT-AAGAGGA-TTCTGAAGATAAAGGAGCTCGCTGCCAAG  197
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  TAAAGACCTAGTAAAGAGGATTTCTGAAGATAAAGGAGCTCGCTGCCAAG  197

seq1  CCTGACGACCTGAGTTCAATCCCCAGGACCCACGTGGTAGAAGGACAAAA  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGACGACCTGAGTTCAATCCCCAGGACCCACGTGGTAGAAGGACAAAA  246

seq1  CTAACTGCTGTTGGTGCTCTGGTGCCAGCCTGCATGCTGTGGCAGTGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCTGTTGGTGCTCTGGTGCCAGCCTGCATGCTGTGGCAGTGCCC  296

seq1  CTCCCCCAACAAATAAACAAATAATTGTAATAATAATATTTAAAAGTCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAACAAATAAACAAATAATTGTAATAATAATATTTAAAAGTCCC  346

seq1  AGGATCACAAACCGTAAGCCAGTCCTTCCTGCCCTCACAGGGCTTGATCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCACAAACCGTAAGCCAGTCCTTCCTGCCCTCACAGGGCTTGATCC  396

seq1  CGCCTACCACTGAATCCCGCCTACCACTGAATCCCGCCTACCACTGAATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTACCACTGAATCCCGCCTACCACTGAATCCCGCCTACCACTGAATC  446

seq1  CCGCCTACCGCTGAATCCCGCCTACCTGCTCCTTGGTTTGTGCTTTCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTACCGCTGAATCCCGCCTACCTGCTCCTTGGTTTGTGCTTTCTGA  496

seq1  ACATAATCTCGGCCCACTTTGATGCGGGGTGTGAGAAGGGCTCTGGAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCTCGGCCCACTTTGATGCGGGGTGTGAGAAGGGCTCTGGAGAA  546

seq1  GTCGGTCACTCCGAGTCCCAAGAGGCGGCAAAGCTTCTGGGCAGCTGAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCACTCCGAGTCCCAAGAGGCGGCAAAGCTTCTGGGCAGCTGAGG  596

seq1  GAGAGAGCAGGTGACAGGGGTTAGTGGGGAGGGACATCGGACCCCTCCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGCAGGTGACAGGGGTTAGTGGGGAGGGACATCGGACCCCTCCGT  646

seq1  TGGGGGAAAGAGGTGGAGGTGGCCCTTTCTGGGAGGAGCATCCTGAGCGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAAGAGGTGGAGGTGGCCCTTTCTGGGAGGAGCATCCTGAGCGA  696

seq1  ACCAGGCGCTGGGTTAAGAGGCCTGTGCCTCTGGGCCTTGGGTGATGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCGCTGGGTTAAGAGGCCTGTGCCTCTGGGCCTTGGGTGATGCAC  746

seq1  ATTTTCAGCAGGAACAACTAGCACACCTCTGCACTAGCACGTTAAATAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGCAGGAACAACTAGCACACCTCTGCACTAGCACGTTAAATAGA  796

seq1  TGGATGTTTGCGGCGGAGCACGCCAGGGCTGCGTGGGAGGCGTGTTTCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTGCGGCGGAGCACGCCAGGGCTGCGTGGGAGGCGTGTTTCCC  846

seq1  TTTCTACTCTGAATTAAAGCCTGAATCAAGCCACGTTCCCAGGCATCCGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTCTGAATTAAAGCCTGAATCAAGCCACGTTCCCAGGCATCCGT  896

seq1  CAGCTCCACGGAGGGAAAGCTTACTCTGCTCTTGGCCCCACAGAAGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCACGGAGGGAAAGCTTACTCTGCTCTTGGCCCCACAGAAGAAAA  946

seq1  AAGAGAAGCCTAGAAAGAAATGCATTAAAAAGGCACCAGAGTCAGACATG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCCTAGAAAGAAATGCATTAAAAAGGCACCAGAGTCAGACATG  996

seq1  GTGGCACATACCTGCCAACCCAGTATCTGAGAGTCTGAGGGAGGAGAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATACCTGCCAACCCAGTATCTGAGAGTCTGAGGGAGGAGAATC  1046

seq1  AAGAATTC  1055
      ||||||||
seq2  AAGAATTC  1054

seq1: chr7_51758161_51759273
seq2: B6Ng01-344E16.g_66_1180

seq1  GAATTCACTCTGTAGCATAGGTTGGCTTCAAACTCACATCTCCTAGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGCATAGGTTGGCTTCAAACTCACATCTCCTAGATCA  50

seq1  GCTTGAGCATTCTTGGGTACTGGAATGACAGATGTGCAGCACACCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCATTCTTGGGTACTGGAATGACAGATGTGCAGCACACCCCAGA  100

seq1  CAGTTTAAAAGTCATTTTAAATCCCAAATGGGGATGCTCTGAGAACCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAAAAGTCATTTTAAATCCCAAATGGGGATGCTCTGAGAACCTGC  150

seq1  CAGCTGTCAGAAGTCAGCGGGAGTCTGCCGTGAGGATGCATCTGAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCAGAAGTCAGCGGGAGTCTGCCGTGAGGATGCATCTGAGCTGA  200

seq1  CTTAGTCACCCACAAGAAGACCCCAGAATAGAGGGTGGCTCAGCCTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCACCCACAAGAAGACCCCAGAATAGAGGGTGGCTCAGCCTGACT  250

seq1  CCAGAATGCAGCCAGTGGGAGGGGGAGGCGGGGTGCTCCCAGAACTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGCAGCCAGTGGGAGGGGGAGGCGGGGTGCTCCCAGAACTGTCC  300

seq1  CTGAGGGGCTGAAGATCCTGTTTGCTAAGCTGTCTCAGGGCCAGGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGCTGAAGATCCTGTTTGCTAAGCTGTCTCAGGGCCAGGGACAT  350

seq1  CAGCATTGTCAAGTGTCTCCAGATCAAGCAGGGGCATGCTAATGTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTGTCAAGTGTCTCCAGATCAAGCAGGGGCATGCTAATGTGTACT  400

seq1  CTGGGCCACCTGATCTGCCTCCTTCCACAATGTCTTGGGGACTGAATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCACCTGATCTGCCTCCTTCCACAATGTCTTGGGGACTGAATCCA  450

seq1  GCAAAGGAGATGAGGAAGTTTTCTTGGAAGATGGTTCAGCATATGCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGATGAGGAAGTTTTCTTGGAAGATGGTTCAGCATATGCCAGA  500

seq1  GACCAAGAGTAGGGACATATGTAGCCACTGTAGTCCCACCAAGACACACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAGTAGGGACATATGTAGCCACTGTAGTCCCACCAAGACACACG  550

seq1  ACACCACTGTGGTCCCACCAAGACACGCGACACCGAATTCCAGGCTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTGTGGTCCCACCAAGACACGCGACACCGAATTCCAGGCTGGAA  600

seq1  AGACTGTGGTGATGGTGGGGGAGTTTGACGAGTAGGGGAGCGCTAGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGGTGATGGTGGGGGAGTTTGACGAGTAGGGGAGCGCTAGCTCA  650

seq1  ACTCTGATTCCAGGGGCGAAGGACAGGAGGAGGCTTGACAGAGGAGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATTCCAGGGGCGAAGGACAGGAGGAGGCTTGACAGAGGAGGGAT  700

seq1  TGCAGGTGGGGCACAAGCTAGGGCTGGTGCTCTCCAACCCCAGGGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGGGGCACAAGCTAGGGCTGGTGCTCTCCAACCCCAGGGCCTTT  750

seq1  GCATGACCTGTATTGCCTTCTTGCCTGGGGCATCTGGGTAGGTTCGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACCTGTATTGCCTTCTTGCCTGGGGCATCTGGGTAGGTTCGCCAG  800

seq1  GGGCCCTGGATTAGGGTCAGTCAGTGTGGGACCATTCCCTTCTCACCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGGATTAGGGTCAGTCAGTGTGGGACCATTCCCTTCTCACCTCG  850

seq1  GACATCCAG-TTTGCA-TTCAGCCAGGGCTTCCCCCAGCTC-ATTGAAGG  897
      ||||||||| |||||| |||||||||||||||||||||||| ||| ||||
seq2  GACATCCAGTTTTGCATTTCAGCCAGGGCTTCCCCCAGCTCAATTAAAGG  900

seq1  CGCGGCA-GGAAT-AGGTCCCTGCATCAAAGGGTGACGGTC-GGCGGATG  944
      ||||||| ||||| |||| |||||||| |||| |||||||| ||||||||
seq2  CGCGGCAGGGAATAAGGTTCCTGCATC-AAGGTTGACGGTCAGGCGGATG  949

seq1  -TTCAGTGTCAGGATGCCCTGGTAGTTGGTTATGAGGAATTTGGGATCTT  993
       |||||||||||  |||||||||   ||||||||||| ||||||||||||
seq2  TTTCAGTGTCAGATTGCCCTGGTTAGTGGTTATGAGG-ATTTGGGATCTT  998

seq1  CATGGATTTCCATCTTGTTCTTCATCCACACCACCTTTGGCTAGGGAAGG  1043
      ||||||||||||||||||||||||| ||||| | ||||||||||| ||||
seq2  CATGGATTTCCATCTTGTTCTTCAT-CACACTA-CTTTGGCTAGGTAAGG  1046

seq1  GAACCAGGGAGAAAGCTG--ACTTAAAGGGATGTCCTGGACAGAAACCAT  1091
      ||| |||||  |||||||   |||||||| ||||| || ||   ||||||
seq2  GAA-CAGGG-CAAAGCTGTACCTTAAAGGAATGTCTTGAAC--GAACCAT  1092

seq1  GACACTACCTGCATGG-GTACAC  1113
      ||||| | |||||||| ||||||
seq2  GACACCATCTGCATGGTGTACAC  1115