BAC Information

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BAC

Clone NameB6Ng01-345K08
Chromosome7 (Build37)
Map Location 116,149,006 - 116,150,079
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265
Downstream geneTub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345K08.bB6Ng01-345K08.g
ACCGA127778GA127779
length1,141846
definitionB6Ng01-345K08.b B6Ng01-345K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgctccaggttccagtcaaagatctgaattaatagatcaca
cattcatcggttggtggtggcccatgacttttatcccagcatttgggagg
cagaggcaggcggatctctgagtttgacagcctggtctacagagccaatc
caaggacagctagggctacatagagaaaccttgtctcacaaaaagaaaag
caggactttgaagagcctggatctgtgccccagccaacactcatcttgtc
acatataagagatgcttcaaagaaggtctggggagagtttagaagaaatt
ttagagaaagccttagggcctagagactcctaataattagaaaatgtgga
gtaagctactgccttcaccccaaatgcagtgagtaaggctttgcagagac
ccatagtggagtttaatgtatggccatgacggccttggggcaccatccat
gacaaatacatagagccaggaacaacctgcctcttccctcctggctggaa
ggtttcgttgggaggactcagcatagacttgtgcccaggtttgcaagaca
agggacagtgatggttccttgggtcctgaccccaggatacccaagtgtga
gtggcttaggtgcaggccaagaagtctccattgtaggaggtgacggcagc
agggagggcgcaagcctgagctttttagggctggagaaaggaacttgaag
aggcgccccagggaaggatcagctagaaggaacatcagtgatagcacagt
ctccagcatctcccaacagcactcttaaaaacacaggagctcctcagagt
acagtcacagaagaaacctgacttcctctcctcccatccccctccttcca
tctagaaacctggagaggggtcagatagttctttgcaagcttaccctccc
ctgtaagatgctgttctatgttagactgtactgggtaggagttgtttaaa
gtagctgaagtctttttggggaagaaggatgcaattccatggtggaaacc
tttccctaccatgcacaagtcctaggcttgtccccagcatcacatcacac
acagaagagacggatatgcagtctagaaggaatgggaatgacaggtcaga
cacgtgattggcctgaatgtcaatgagctcatggttagtct
gaattctatagttacctctgtactccactttttaatagggttatttggtt
ctctggagtctgccttcatgagttctttctgtatattgaatattagccct
ctatcagatgttgggttggtaaatatcttttctcaatctgtgggttgcca
ttttgtcctattgataatgacccttgctttacagaagcttttcaatttat
gaggtccaatttttcaattgttgctcttaaagaataaaccattggtgttc
tgttcaggaagttttcctctgtgcccaagtattcaaggctcttcaccact
ttctcttctattagatttagaatatctggtttaatgttgaggtccttgat
ccacttggacttgagctttgtgcaaaggagataggtatggatcaatttgc
attcttctacatgcagactgccagttgaaccagcagcagtagttaaaaat
gctgtctttcttccactgaatggttttagcttcgtcaaagatcaagcaac
cataggtgtgtgggttcatttctgcatcttcaattctattccattgattt
acttgcctgtttttgtaccaacaccatgcatttttatactattgctctgt
aatacaatttgaggtccgtgatggtgatttcccaagaagtttttttattg
ttgagaatagtttttgctatcctagattttttttgttttttgttttgttt
tgttttgttttggggggggatattttcttttttttttaatactttatatt
acgtattttcctcaattacatttccaatgctatcacaaaagtcccccata
ccctcccccccccactttccctacccaccattccattttttttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116149006_116150079
seq2: B6Ng01-345K08.b_49_1189 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AGACTAACCATGAGCTCATTGACATTCAGGCCAATCACGTGTCTGACCTG  50

seq1  -----------------AGACTAACCATATCCGTCTC-TCTGTGTGTGAT  32
                       |||||   |||||||||||| ||||||||||||
seq2  TCATTCCCATTCCTTCTAGACT--GCATATCCGTCTCTTCTGTGTGTGAT  98

seq1  GTGATGCTGGGGAACAAGCCTAGGACCTTGTGCATGGTAGGG-AAGGTTT  81
      |||||||||||| |||||||||||| |||||||||||||||| |||||||
seq2  GTGATGCTGGGG-ACAAGCCTAGGA-CTTGTGCATGGTAGGGAAAGGTTT  146

seq1  CCACCATGGAATTGCATCCTTCTTCCCC-AAAAGACTTCAGCTACTTT-A  129
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CCACCATGGAATTGCATCCTTCTTCCCCAAAAAGACTTCAGCTACTTTAA  196

seq1  ACAACTCCTACCCAGTACAGTCTAACATAGAACAGCATCTTACAGGGGAG  179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTACCCAGTACAGTCTAACATAGAACAGCATCTTACAGGGGAG  246

seq1  GGTAAGCTTGCAAAGAACTATCTGACCCCTCTCCAGGTTTCTAGATGGAA  229
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCTTGCAAAGAACTATCTGACCCCTCTCCAGGTTTCTAGATGGAA  296

seq1  GGAGGGGGATGGGAGGAGAGGAAGTCAGGTTTCTTCTGTGACTGTACTCT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGATGGGAGGAGAGGAAGTCAGGTTTCTTCTGTGACTGTACTCT  346

seq1  GAGGAGCTCCTGTGTTTTTAAGAGTGCTGTTGGGAGATGCTGGAGACTGT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTCCTGTGTTTTTAAGAGTGCTGTTGGGAGATGCTGGAGACTGT  396

seq1  GCTATCACTGATGTTCCTTCTAGCTGATCCTTCCCTGGGGCGCCTCTTCA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCACTGATGTTCCTTCTAGCTGATCCTTCCCTGGGGCGCCTCTTCA  446

seq1  AGTTCCTTTCTCCAGCCCTAAAAAGCTCAGGCTTGCGCCCTCCCTGCTGC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTCTCCAGCCCTAAAAAGCTCAGGCTTGCGCCCTCCCTGCTGC  496

seq1  CGTCACCTCCTACAATGGAGACTTCTTGGCCTGCACCTAAGCCACTCACA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACCTCCTACAATGGAGACTTCTTGGCCTGCACCTAAGCCACTCACA  546

seq1  CTTGGGTATCCTGGGGTCAGGACCCAAGGAACCATCACTGTCCCTTGTCT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTATCCTGGGGTCAGGACCCAAGGAACCATCACTGTCCCTTGTCT  596

seq1  TGCAAACCTGGGCACAAGTCTATGCTGAGTCCTCCCAACGAAACCTTCCA  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCTGGGCACAAGTCTATGCTGAGTCCTCCCAACGAAACCTTCCA  646

seq1  GCCAGGAGGGAAGAGGCAGGTTGTTCCTGGCTCTATGTATTTGTCATGGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGGGAAGAGGCAGGTTGTTCCTGGCTCTATGTATTTGTCATGGA  696

seq1  TGGTGCCCCAAGGCCGTCATGGCCATACATTAAACTCCACTATGGGTCTC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCCAAGGCCGTCATGGCCATACATTAAACTCCACTATGGGTCTC  746

seq1  TGCAAAGCCTTACTCACTGCATTTGGGGTGAAGGCAGTAGCTTACTCCAC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCTTACTCACTGCATTTGGGGTGAAGGCAGTAGCTTACTCCAC  796

seq1  ATTTTCTAATTATTAGGAGTCTCTAGGCCCTAAGGCTTTCTCTAAAATTT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAATTATTAGGAGTCTCTAGGCCCTAAGGCTTTCTCTAAAATTT  846

seq1  CTTCTAAACTCTCCCCAGACCTTCTTTGAAGCATCTCTTATATGTGACAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAACTCTCCCCAGACCTTCTTTGAAGCATCTCTTATATGTGACAA  896

seq1  GATGAGTGTTGGCTGGGGCACAGATCCAGGCTCTTCAAAGTCCTGCTTTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGTTGGCTGGGGCACAGATCCAGGCTCTTCAAAGTCCTGCTTTT  946

seq1  CTTTTTGTGAGACAAGGTTTCTCTATGTAGCCCTAGCTGTCCTTGGATTG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGAGACAAGGTTTCTCTATGTAGCCCTAGCTGTCCTTGGATTG  996

seq1  GCTCTGTAGACCAGGCTGTCAAACTCAGAGATCCGCCTGCCTCTGCCTCC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGACCAGGCTGTCAAACTCAGAGATCCGCCTGCCTCTGCCTCC  1046

seq1  CAAATGCTGGGATAAAAGTCATGGGCCACCACCAACCGATGAATGTGTGA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGGGATAAAAGTCATGGGCCACCACCAACCGATGAATGTGTGA  1096

seq1  TCTATTAATTCAGATCTTTGACTGGAACCTGGAGCAGAAGAATTC  1074
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAATTCAGATCTTTGACTGGAACCTGGAGCAGAAGAATTC  1141