BAC Information

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BAC

Clone NameB6Ng01-348H18
Chromosome7 (Build37)
Map Location 64,440,437 - 64,541,096
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneHerc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348H18.bB6Ng01-348H18.g
ACCGA129768GA129769
length1,1881,129
definitionB6Ng01-348H18.b B6Ng01-348H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,539,913 - 64,541,096)(64,440,437 - 64,441,577)
sequence
gaattccaagtcatcttggggaacaaagtaagactttgtctcaaaagata
aacaaacacaaagaaatatacaaacaaacacaaaccctccaacaaaaata
agagatgaacacagtctaactgccattttaggtgaaataaaactatattc
aaactgtgctgctatagtatatgtgcatatatatatatacacacacttgg
catgtatacatgcttgcatatggaaacctgatgtcagtatcaggtagttt
tcttgattgtgctacaatatatttttagagagagtctctcattgaatctg
gagttcactgatttggctttaggcctagccactgagctatggcgatccca
ggattgtgcctctgtgcctggcttattatgttggtattagatatttgaac
taagacctggaaccattttttttttttttgcacagtcacttccctgggcc
atgcatttttaaaacagtgccttgggctgcaagaaaccataatcacaatt
agtcaatccattcatgaagcctacccacaaatgaattttgaacactgtgg
ccactcccagaataattttagaacctgattggccatggaaatgctaagct
gcagtaagaggaggctcagcataattaaattgtttaaaggatatagaaat
tctttatgtaagaatcatggatgggtacttcagtctggtagcttctctag
tcttcttttatttaggggaaaggctccatcgcgtccagtgtgaggctgca
gtcattggtctttgtcccagcaataaccatagatactacaagccagtggt
cttgttctagctttggagataagatcccttggggaaacctaaggtggagc
cacagcctgctagggtgactctagaggttgagattgctgtctagaagaca
tgctactaccatagaaaggtgaggaaatggattttcatgtagtgtttcat
gggataaaatcccaagttctcaaaagatatgctgacctgcaatgtaataa
cctggctactgaacactggaaataatcctcaatttttctttcaacttgaa
aatttgagccaataaataggagtcagtatttgccttccaaatcagagctt
cctccattttgaaatgcttgtaggtccagggtgcgccttacgttctaaac
ctcctgtagatgtccccaagtataccagggacccactc
gaattccaaggtctaggtctggtcctgacctacagaagcaatgcctgctt
tccctgactgagtagtagtgtgatacacagctttgcaacttcccacacag
caaaaacaaaacaaaacaaagaaacaaaccaacccctccatgctcatctg
gcaaagttgccagctcaaagtaaaacacatcaaatcctagcaaacaggaa
tccccctaaacttcgagcctgcatattggtgtgagaccagagggagctcc
ctgttaatacattaatgggaagctagcagggaaatgcatcaccatgaaag
atgaacctcagagcaagcagaaacatcaaaggaaacaaaagtaacactga
accagaagataatcacctttcctttataaaaggaggatttcaagattgaa
agagaaattagtaatttctaaaagttcatatggctggcatggaaacttga
aatcatttctcaagaaaaaaaaaaaggaggcatagaaataatataaaagt
aaagcaacatggaacaacctgacaaagaaataacacaaatttctccagat
ggaagacttcatttaggcgtgaaatgggcctaacacaaagaaaagggagc
aggaactgcctgcatttaaaacacagaaattcaaagttctggaacaccag
gaaaattcaagtcttgatttataattaagagtaaaagagccagggcagcc
gggcgtgtggcacacacctttaatcccagcacttgggaggcagaggcagg
tggatttctgagttcgaggccagcctggtctacaaagtgagttctaggat
agccagggctacacagtgaaaccctgtctcaatttaaaaaaaaaaaaaag
aaaaaaaaagagctcagatgggagcagcccagggtctcaaaggttttcaa
tattaatttatttttcaatttatagtttctgtaatgaacagaaaattaaa
catgaccagagagataggagaaacacataaaagtgtctagaagaagggaa
agtgaaggtctttggtagtgtataaacagcagagggagctggcgagaaat
cccacaggctgcagaattagcaagtgccttgacttccgacagcatctgga
acttgcactggtgcgaagaaataggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64539913_64541096
seq2: B6Ng01-348H18.b_50_1237 (reverse)

seq1  GAGTTGGTCCCTTGGGTATACTTGAGGACAACCTTAACAGGA-GTTTAGA  49
      |||| |||||||  |||||||||| |||||   |  |||||| |||||||
seq2  GAGTGGGTCCCT--GGTATACTTGGGGACA---TCTACAGGAGGTTTAGA  45

seq1  AAGTAA-GCGCACCCTGGACTTACAAAGCATTTCAAAATGGA-GAAGCTT  97
      | |||| ||||||||||||| ||| ||||||||||||||||| ||||| |
seq2  ACGTAAGGCGCACCCTGGACCTAC-AAGCATTTCAAAATGGAGGAAGC-T  93

seq1  CTGATTTGGAA-GCAAATACCTGACTCCCTATTTATTGGCTCAAATTTTC  146
      ||||||||||| ||||||| |||||| |||||||||||||||||||||||
seq2  CTGATTTGGAAGGCAAATA-CTGACT-CCTATTTATTGGCTCAAATTTTC  141

seq1  AAGTTGAAAG-AAAATTGA-GATTATCT-CAGTTGTCAGTAG-CAAGTTA  192
      |||||||||| |||||||| |||||| | ||||  ||||||| || ||||
seq2  AAGTTGAAAGAAAAATTGAGGATTATTTCCAGTGTTCAGTAGCCAGGTTA  191

seq1  -TACATTGCAGGTCAGCATATCTTTTGTAGAACTTGG--ATTTATCCCAT  239
       |||||||||||||||||||||||||| |||||||||   ||||||||||
seq2  TTACATTGCAGGTCAGCATATCTTTTG-AGAACTTGGGATTTTATCCCAT  240

seq1  GAAACACTACATGAAAATCCATTTCCTCACC-TTCTATGGTAGTAGCATG  288
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAACACTACATGAAAATCCATTTCCTCACCTTTCTATGGTAGTAGCATG  290

seq1  TCTTCTAGACAGCAATCTCAACCTCTAGAGTCACCCTAGCAGGCTGTGGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGACAGCAATCTCAACCTCTAGAGTCACCCTAGCAGGCTGTGGC  340

seq1  TCCACCTTAGGTTTCCCCAA-GGATCTTATCTCCAAAGCTAGAACAAGA-  386
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  TCCACCTTAGGTTTCCCCAAGGGATCTTATCTCCAAAGCTAGAACAAGAC  390

seq1  CACTGGCTTGTAGTATCTATGGTTATTGCTGGGACAAAGACCAATGACTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTTGTAGTATCTATGGTTATTGCTGGGACAAAGACCAATGACTG  440

seq1  CAGCCTCACACTGGACGCGATGGAGCCTTTCCCCTAAATAAAAGAAGACT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCACACTGGACGCGATGGAGCCTTTCCCCTAAATAAAAGAAGACT  490

seq1  AGAGAAGCTACCAGACTGAAGTACCCATCCATGATTCTTACATAAAGAAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCTACCAGACTGAAGTACCCATCCATGATTCTTACATAAAGAAT  540

seq1  TTCTATATCCTTTAAACAATTTAATTATGCTGAGCCTCCTCTTACTGCAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATCCTTTAAACAATTTAATTATGCTGAGCCTCCTCTTACTGCAG  590

seq1  CTTAGCATTTCCATGGCCAATCAGGTTCTAAAATTATTCTGGGAGTGGCC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATTTCCATGGCCAATCAGGTTCTAAAATTATTCTGGGAGTGGCC  640

seq1  ACAGTGTTCAAAATTCATTTGTGGGTAGGCTTCATGAATGGATTGACTAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTCAAAATTCATTTGTGGGTAGGCTTCATGAATGGATTGACTAA  690

seq1  TTGTGATTATGGTTTCTTGCAGCCCAAGGCACTGTTTTAAAAATGCATGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTATGGTTTCTTGCAGCCCAAGGCACTGTTTTAAAAATGCATGG  740

seq1  CCCAGGGAAGTGACTGTGCAAAAAAAAAAAAAATGGTTCCAGGTCTTAGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAAGTGACTGTGCAAAAAAAAAAAAAATGGTTCCAGGTCTTAGT  790

seq1  TCAAATATCTAATACCAACATAATAAGCCAGGCACAGAGGCACAATCCTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATCTAATACCAACATAATAAGCCAGGCACAGAGGCACAATCCTG  840

seq1  GGATCGCCATAGCTCAGTGGCTAGGCCTAAAGCCAAATCAGTGAACTCCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGCCATAGCTCAGTGGCTAGGCCTAAAGCCAAATCAGTGAACTCCA  890

seq1  GATTCAATGAGAGACTCTCTCTAAAAATATATTGTAGCACAATCAAGAAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATGAGAGACTCTCTCTAAAAATATATTGTAGCACAATCAAGAAA  940

seq1  ACTACCTGATACTGACATCAGGTTTCCATATGCAAGCATGTATACATGCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGATACTGACATCAGGTTTCCATATGCAAGCATGTATACATGCC  990

seq1  AAGTGTGTGTATATATATATATGCACATATACTATAGCAGCACAGTTTGA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTATATATATATATGCACATATACTATAGCAGCACAGTTTGA  1040

seq1  ATATAGTTTTATTTCACCTAAAATGGCAGTTAGACTGTGTTCATCTCTTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTTATTTCACCTAAAATGGCAGTTAGACTGTGTTCATCTCTTA  1090

seq1  TTTTTGTTGGAGGGTTTGTGTTTGTTTGTATATTTCTTTGTGTTTGTTTA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGGAGGGTTTGTGTTTGTTTGTATATTTCTTTGTGTTTGTTTA  1140

seq1  TCTTTTGAGACAAAGTCTTACTTTGTTCCCCAAGATGACTTGGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGACAAAGTCTTACTTTGTTCCCCAAGATGACTTGGAATTC  1188

seq1: chr7_64440437_64441577
seq2: B6Ng01-348H18.g_63_1191

seq1  GAATTCCAAGGTCTAGGTCTGGTCCTGACCTACAGAAGCAATGCCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTCTAGGTCTGGTCCTGACCTACAGAAGCAATGCCTGCTT  50

seq1  TCCCTGACTGAGTAGTAGTGTGATACACAGCTTTGCAACTTCCCACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACTGAGTAGTAGTGTGATACACAGCTTTGCAACTTCCCACACAG  100

seq1  CAAAAACAAAACAAAACAAAGAAACAAACCAACCCCTCCATGCTCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAAACAAAACAAAGAAACAAACCAACCCCTCCATGCTCATCTG  150

seq1  GCAAAGTTGCCAGCTCAAAGTAAAACACATCAAATCCTAGCAAACAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTGCCAGCTCAAAGTAAAACACATCAAATCCTAGCAAACAGGAA  200

seq1  TCCCCCTAAACTTCGAGCCTGCATATTGGTGTGAGACCAGAGGGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTAAACTTCGAGCCTGCATATTGGTGTGAGACCAGAGGGAGCTCC  250

seq1  CTGTTAATACATTAATGGGAAGCTAGCAGGGAAATGCATCACCATGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATACATTAATGGGAAGCTAGCAGGGAAATGCATCACCATGAAAG  300

seq1  ATGAACCTCAGAGCAAGCAGAAACATCAAAGGAAACAAAAGTAACACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTCAGAGCAAGCAGAAACATCAAAGGAAACAAAAGTAACACTGA  350

seq1  ACCAGAAGATAATCACCTTTCCTTTATAAAAGGAGGATTTCAAGATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGATAATCACCTTTCCTTTATAAAAGGAGGATTTCAAGATTGAA  400

seq1  AGAGAAATTAGTAATTTCTAAAAGTTCATATGGCTGGCATGGAAACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATTAGTAATTTCTAAAAGTTCATATGGCTGGCATGGAAACTTGA  450

seq1  AATCATTTCTCAAGAAAAAAAAAAAGGAGGCATAGAAATAATATAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCTCAAGAAAAAAAAAAAGGAGGCATAGAAATAATATAAAAGT  500

seq1  AAAGCAACATGGAACAACCTGACAAAGAAATAACACAAATTTCTCCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACATGGAACAACCTGACAAAGAAATAACACAAATTTCTCCAGAT  550

seq1  GGAAGACTTCATTTAGGCGTGAAATGGGCCTAACACAAAGAAAAGGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTTCATTTAGGCGTGAAATGGGCCTAACACAAAGAAAAGGGAGC  600

seq1  AGGAACTGCCTGCATTTAAAACACAGAAATTCAAAGTTCTGGAACACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCCTGCATTTAAAACACAGAAATTCAAAGTTCTGGAACACCAG  650

seq1  GAAAATTCAAGTCTTGATTTATAATTAAGAGTAAAAGAGCCAGGGCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCAAGTCTTGATTTATAATTAAGAGTAAAAGAGCCAGGGCAGCC  700

seq1  GGGCGTGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  750

seq1  TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGAT  800

seq1  AGCCAGGGCTACACAGTGAAACCCTGTCTCAATTAAAAAAAAAAAAAAAA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||| 
seq2  AGCCAGGGCTACACAGTGAAACCCTGTCTCAATTTAAAAAAAAAAAAAAG  850

seq1  AAAAGAAAAAAAAGAGCTCAGAT-GGAGCAGCCCAAGGGTCTCAAAGGTT  899
      |    |||||||||||||||||| |||||||||| |||||||||||||||
seq2  A----AAAAAAAAGAGCTCAGATGGGAGCAGCCC-AGGGTCTCAAAGGTT  895

seq1  TTCAATATTAATTTATTTTTCAATTTATAGTTTCTGTAATGAACAGAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAATATTAATTTATTTTTCAATTTATAGTTTCTGTAATGAACAGAAAA  945

seq1  TTAAACATGACCAAGAAGAGATAGGAGAAACACATAAAAGTGTCTAGAAG  999
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTAAACATGACCA--GAGAGATAGGAGAAACACATAAAAGTGTCTAGAAG  993

seq1  AAAGGAAAGTGAAAGGCCTTGGTAAGTGTTATAAACAGCAGAGGAAGCTT  1049
      || |||||||||| | | ||||| |||| ||||||||||||||| ||| |
seq2  AAGGGAAAGTGAAGGTCTTTGGT-AGTG-TATAAACAGCAGAGGGAGC-T  1040

seq1  GGCGAGAAA-CCCACAAGGCTGCAGAATTAGC-AGTGCTTTGACTCCCAG  1097
      ||||||||| ||||| |||||||||||||||| ||||| |||||| ||  
seq2  GGCGAGAAATCCCAC-AGGCTGCAGAATTAGCAAGTGCCTTGACTTCC--  1087

seq1  AAACAAAGCATCTG--AC-TGCACTGTGTGCAGAAGGAATAAGTGGG  1141
          | ||||||||  || ||||||| |||| |||| |||| |||||
seq2  ---GACAGCATCTGGAACTTGCACTG-GTGC-GAAGAAATAGGTGGG  1129