BAC Information

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BAC

Clone NameB6Ng01-348P05
Chromosome7 (Build37)
Map Location 28,175,747 - 28,333,362
singlet/doubletdoublet
Overlap geneSpnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3
Upstream geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1
Downstream gene2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348P05.bB6Ng01-348P05.g
ACCGA130085GA130086
length8371,097
definitionB6Ng01-348P05.b B6Ng01-348P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,332,525 - 28,333,362)(28,175,747 - 28,176,838)
sequence
gaattctaggctaacctaagatacatagaccctgtctgactaaaacaaaa
aacaaaaaagactgtgtagttttgttggtttgaggggttcttggatttgt
ttgtgtatgtgaaagtgtttgcatgtgtgtgtgcatgctcagaggccaaa
gaagggcatccacctgtggccttctttgccatggtctcagagaatcttga
gctcagctaggcaagcccagcaaccctgctgtctctccctttctggtatg
agggttacaggtgccacacccagctttttatatggttgctgaggattcga
acacagatcctcaggcttggatagccaactcactcacccacagacccttc
tctccaggccctgattttgtttttgtttagttttgtttttcggacaaggc
ctcatcctgtagttcagactggcctgggacgcctgatcctcctgcctcat
cctcccaggtgctgggataacagcattttggagcctctagaataaagccc
attcagtgaggccagccgacatatttacttgcaggaggagatgggtgacc
tgggtaccaggctgtgctgctggttctgtacccaggtgctgggcacaggg
ctgactaaaacagcatagccctgaccctatagggctcacagctctgaagg
agtgagggagagccagcaacaggcagggacagcccagagaggttgggact
aagatacaggaagcccagatagagaattggagattgaatggggaggcatg
aggtagaggacccaaaagctgaatgtgtagtctctttctttctttctttc
tttctctctctctctctcttctctctctctctctctc
gaattccatccaaggtagtagtgaagacttgaagggtccgggttcaaatc
caactccggccatttgctccccaagtgggggaaattcactttccacagcc
tccatttatgatcagccaatcaaatgccatccctggcatttaaagacagg
tgccattccacctctggaggaatacggagtctacatccacaccccacatc
tatgtgccacacagacctccaaggcctgaacaccaaccagctgccaaact
agccgtggggcttaggcaggcacagagatgctctttaggggccctttgtt
gggtaaggcagaaactggccactacgcatctttgggtcaggcacttcaat
tttgtgtggttttctcattggtaagatcaggctaataacagcatctgctt
ctgggattgctgcaggggtcgacaaacattgagcccagggaccagaagaa
gaaatactccacggagtatttaccctggctaaagatgttctcttacctct
gggcctttctttctccacacagaaaatattgaatcctgaggaaatgtctt
gtattgcttatttctttctaggttccctctgtcctgtgtgtccctgacta
cagggtgatggctgcttccagtgactccgagctggacagcctcaggttga
aacaccccagagggttggatgtgagccccctcaccaggccagccagtaga
tcatacctgtaacttcttgagctggctgttgacagtggccaggtccccac
cggggtctacgtcttgcagctggctttccatgtgaagcagccgcttgtcc
agctccgcgaagctctgcactagctggtccgccttgctggcctcgaagag
ctggcgcgccttgggcctgtgtggtgctctccagctccgcccagcactgc
cggatcttcaacctaatttctttgcgcacagagggctgccagctccgggt
ttctcctgcatcagttgctgggcccttcctggccagaggatgatgtcggg
agtcggaaaggagagaagaagagatggtcaacagaaacagacgagaattc
gtgacaacagggagaagacactagagtacgagtagtatggagttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_28332525_28333362
seq2: B6Ng01-348P05.b_49_885 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGA-AGAGAGAGAGAGAGAGAAAGAAAGAAAGAAA  49

seq1  GAAAGAGACTACACATTCAGCTTTTGGGTCCTCTACCTCATGCCTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGACTACACATTCAGCTTTTGGGTCCTCTACCTCATGCCTCCCCA  99

seq1  TTCAATCTCCAATTCTCTATCTGGGCTTCCTGTATCTTAGTCCCAACCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTCCAATTCTCTATCTGGGCTTCCTGTATCTTAGTCCCAACCTC  149

seq1  TCTGGGCTGTCCCTGCCTGTTGCTGGCTCTCCCTCACTCCTTCAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTGTCCCTGCCTGTTGCTGGCTCTCCCTCACTCCTTCAGAGCTG  199

seq1  TGAGCCCTATAGGGTCAGGGCTATGCTGTTTTAGTCAGCCCTGTGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTATAGGGTCAGGGCTATGCTGTTTTAGTCAGCCCTGTGCCCAG  249

seq1  CACCTGGGTACAGAACCAGCAGCACAGCCTGGTACCCAGGTCACCCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGTACAGAACCAGCAGCACAGCCTGGTACCCAGGTCACCCATCT  299

seq1  CCTCCTGCAAGTAAATATGTCGGCTGGCCTCACTGAATGGGCTTTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCAAGTAAATATGTCGGCTGGCCTCACTGAATGGGCTTTATTCT  349

seq1  AGAGGCTCCAAAATGCTGTTATCCCAGCACCTGGGAGGATGAGGCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCCAAAATGCTGTTATCCCAGCACCTGGGAGGATGAGGCAGGAG  399

seq1  GATCAGGCGTCCCAGGCCAGTCTGAACTACAGGATGAGGCCTTGTCCGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCGTCCCAGGCCAGTCTGAACTACAGGATGAGGCCTTGTCCGAA  449

seq1  AAACAAAACTAAACAAAAACAAAATCAGGGCCTGGAGAGAAGGGTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACTAAACAAAAACAAAATCAGGGCCTGGAGAGAAGGGTCTGTG  499

seq1  GGTGAGTGAGTTGGCTATCCAAGCCTGAGGATCTGTGTTCGAATCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGAGTTGGCTATCCAAGCCTGAGGATCTGTGTTCGAATCCTCAG  549

seq1  CAACCATATAAAAAGCTGGGTGTGGCACCTGTAACCCTCATACCAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATATAAAAAGCTGGGTGTGGCACCTGTAACCCTCATACCAGAAAG  599

seq1  GGAGAGACAGCAGGGTTGCTGGGCTTGCCTAGCTGAGCTCAAGATTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACAGCAGGGTTGCTGGGCTTGCCTAGCTGAGCTCAAGATTCTCT  649

seq1  GAGACCATGGCAAAGAAGGCCACAGGTGGATGCCCTTCTTTGGCCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATGGCAAAGAAGGCCACAGGTGGATGCCCTTCTTTGGCCTCTGA  699

seq1  GCATGCACACACACATGCAAACACTTTCACATACACAAACAAATCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACACACACATGCAAACACTTTCACATACACAAACAAATCCAAGA  749

seq1  ACCCCTCAAACCAACAAAACTACACAGTCTTTTTTGTTTTTTGTTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCAAACCAACAAAACTACACAGTCTTTTTTGTTTTTTGTTTTAGT  799

seq1  CAGACAGGGTCTATGTATCTTAGGTTAGCCTAGAATTC  838
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGGTCTATGTATCTTAGGTTAGCCTAGAATTC  837

seq1: chr7_28175747_28176838
seq2: B6Ng01-348P05.g_65_1161

seq1  GAATTCCATCCAAGG-AGTAGTGAAGACTTGAAGGGTCCGGGTTCAAATC  49
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAAGGTAGTAGTGAAGACTTGAAGGGTCCGGGTTCAAATC  50

seq1  CAACTCCGGCCATTTGCTCCCCAAGTGGGGGAAATTCACTTTCCACAGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCGGCCATTTGCTCCCCAAGTGGGGGAAATTCACTTTCCACAGCC  100

seq1  TCCATTTATGATCAGCCAATCAAATGCCATCCCTGGCATTTAAAGACAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTATGATCAGCCAATCAAATGCCATCCCTGGCATTTAAAGACAGG  150

seq1  TGCCATTCCACCTCTGGAGGAATACGGAGTCTACATCCACACCCCACATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCCACCTCTGGAGGAATACGGAGTCTACATCCACACCCCACATC  200

seq1  TATGTGCCACACAGACCTCCAAGGCCTGAACACCAACCAGCTGCCAAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCCACACAGACCTCCAAGGCCTGAACACCAACCAGCTGCCAAACT  250

seq1  AGCCGTGGGGCTTAGGCAGGCACAGAGATGCTCTTTAGGGGCCCTTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGGGGCTTAGGCAGGCACAGAGATGCTCTTTAGGGGCCCTTTGTT  300

seq1  GGGTAAGGCAGAAACTGGCCACTACGCATCTTTGGGTCAGGCACTTCAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGCAGAAACTGGCCACTACGCATCTTTGGGTCAGGCACTTCAAT  350

seq1  TTTGTGTGGTTTTCTCATTGGTAAGATCAGGCTAATAACAGCATCTGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGGTTTTCTCATTGGTAAGATCAGGCTAATAACAGCATCTGCTT  400

seq1  CTGGGATTGCTGCAGGGGTCGACAAACATTGAGCCCAGGGACCAGAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTGCTGCAGGGGTCGACAAACATTGAGCCCAGGGACCAGAAGAA  450

seq1  GAAATACTCCACGGAGTATTTACCCTGGCTAAAGATGTTCTCTTACCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTCCACGGAGTATTTACCCTGGCTAAAGATGTTCTCTTACCTCT  500

seq1  GGGCCTTTCTTTCTCCACACAGAAAATATTGAATCCTGAGGAAATGTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTCTTTCTCCACACAGAAAATATTGAATCCTGAGGAAATGTCTT  550

seq1  GTATTGCTTATTTCTTTCTAGGTTCCCTCTGTCCTGTGTGTCCCTGACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTTATTTCTTTCTAGGTTCCCTCTGTCCTGTGTGTCCCTGACTA  600

seq1  CAGGGTGATGGCTGCTTCCAGTGACTCCGAGCTGGACAGCCTCAGGTTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGATGGCTGCTTCCAGTGACTCCGAGCTGGACAGCCTCAGGTTGA  650

seq1  AACACCCCAGAGGGTTGGATGTGAGCCCCCTCACCAGGCCAGCCAGTAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCCAGAGGGTTGGATGTGAGCCCCCTCACCAGGCCAGCCAGTAGA  700

seq1  TCATACCTGTAACTTCTTGAGCTGGCTGTTGACAGTGGCCAGGTCCCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTGTAACTTCTTGAGCTGGCTGTTGACAGTGGCCAGGTCCCCAC  750

seq1  CGGGGTCTACGTCTTGCAGCTGGCTTTCCATGTGAAGCAGCCGCTTGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCTACGTCTTGCAGCTGGCTTTCCATGTGAAGCAGCCGCTTGTCC  800

seq1  AGCTCCGCGAAGCTCTGCACTAGCTGGTCCGCCTTGCTGGCCTCGAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGCGAAGCTCTGCACTAGCTGGTCCGCCTTGCTGGCCTCGAAGAG  850

seq1  CTGGCGCGCCTT-GGCCTGTGTGGTGCTCTCCAGCTCCGCCCAGCACTGC  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCGCCTTGGGCCTGTGTGGTGCTCTCCAGCTCCGCCCAGCACTGC  900

seq1  CGGATCT--CACCTAATTTC-TTGCGCACAGA-GGCTGCCAGCTCC-GGT  943
      |||||||   |||||||||| ||||||||||| ||||||||||||| |||
seq2  CGGATCTTCAACCTAATTTCTTTGCGCACAGAGGGCTGCCAGCTCCGGGT  950

seq1  TTCTCCTGCATCAGTTGCTGG--CCCTCCTGGCCAGAGGGATGGAAGGTC  991
      |||||||||||||||||||||  || ||||||||||| |||||  | |||
seq2  TTCTCCTGCATCAGTTGCTGGGCCCTTCCTGGCCAGA-GGATG--ATGTC  997

seq1  -GGAGTCGGAAAGGAGAGGAAGGAGGAGATGGGCAACAGAAACAGACAGA  1040
       |||||||||||||||||  | || ||||||| |||||||||||||| ||
seq2  GGGAGTCGGAAAGGAGAG--AAGAAGAGATGGTCAACAGAAACAGAC-GA  1044

seq1  GATTCCGTGACAACAGGAGAG-ACACAAAAGAGACAGAGTAG-AAGGAGT  1088
      || | |||||||||||| ||| | |||  ||||   |||||| | |||||
seq2  GAATTCGTGACAACAGG-GAGAAGACACTAGAGTACGAGTAGTATGGAGT  1093

seq1  TAGA  1092
      ||||
seq2  TAGA  1097