Query= MSMg01no045_a15.b1 MSMg01no045_a15.b1 CHROMAT_FILE:
MSMg01no045_a15.b1 PHD_FILE: MSMg01no045_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:53 2005
(547 letters)
>mm_chr7_61913952_61914898
Length = 947
Score = 1006 bits (520), Expect = 0.0
Identities = 541/548 (98%), Gaps = 4/548 (0%)
Strand = Plus / Plus
Query: 3 ggaattctgtactttttctg-c-aatatccacttattagtgaatgcataccatgcatatt 60
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctgtacttttt-tggctaatatccacttattagtgaatgcataccatgcatatt 259
Query: 61 cttttgagtttgagttacttcactcaggatggtatttgctagttccatccatttgcctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttttgagtttgagttacttcactcaggatggtatttgctagttccatccatttgcctgc 319
Query: 121 aaaactcaggatgtccttattcttaatagctgagtagtagtccattgtgtaaattaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaactcaggatgtccttattcttaatagctgagtagtagtccattgtgtaaattaacca 379
Query: 181 cattttttt-gtatccattctttgttgtgggacatctggattgcttccagcttctggcta 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cattttttttgtatccattctttgttgtgggacatctggattgcttccagcttctggcta 439
Query: 240 tcacaaataaggctactacgaacatagtgaaacagtgcctctgtggcatggtgaggcatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaaataaggctactacgaacatagtgaaacagtgcctctgtggcatggtgaggcatc 499
Query: 300 tttttaaaaaaatagcaaaggaaaaatgtccaccacagaagcgaaatcaaggtgacagga 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 tttttaaaaaaatagcaaaggaaaaatgtctaccacagaagcgaaatcaaggtgacagga 559
Query: 360 acaagaagcatctggccactttgagttcatggaaagcagaggattgcttgaggatgtttt 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acaagaagcagctggccactttgagttcatggaaagcagaggattgcttgaggatgtttt 619
Query: 420 gctccagtcatcatattttacttaccctatgggatggtatttctcacattcaaagccaga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 gctccagtcatcatattttacttaccctatgggatggtatttctcacattcagagccaga 679
Query: 480 cttccatatgcattaaaagtctctgaaaacaacttctagacacaaccagagctgtgtctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttccatatgcattaaaagtctctgaaaacaacttctagacacaaccagagctgtgtctc 739
Query: 540 ccagtaaa 547
||||||||
Sbjct: 740 ccagtaaa 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_a15.g1 MSMg01no045_a15.g1 CHROMAT_FILE:
MSMg01no045_a15.g1 PHD_FILE: MSMg01no045_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:53 2005
(403 letters)
>mm_chr7_62024271_62025073
Length = 803
Score = 756 bits (391), Expect = 0.0
Identities = 400/403 (99%)
Strand = Plus / Minus
Query: 1 taaagaaacagattaatccaaatgcatgaataaaaataacactaaagggttatttgcctg 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taaagaaacagattaatcaaaatgcatgaataaaaataacactaaagggttatttgcctg 544
Query: 61 ccacaaagtagattaaatataatagtaacactatgtagtaatgaatatgcatgtagacac 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ccaaaaagtagattaaatataatagtaacactatgtagtaatgaatatgcatgtagacac 484
Query: 121 ttaactataaatgtattttactcacatgtagtaatgagaattaatatatattaatccatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttaactataaatgtattttactcacatgtagtaatgagaattaatatatattaatccatt 424
Query: 181 ttagcttatttatgtatttgcactaattcataaaattttatgtgttctaatttattacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttagcttatttatgtatttgcactaattcataaaattttatgtgttctaatttattacaa 364
Query: 241 gtgtgcaaaatatttaaatgaatctcggtaacatttagaaaaattctgatgttggcttac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgtgcaaaatatttaaatgaatctcggtaacatttagaaaaattctgatgttggcttac 304
Query: 301 ttttggagttactttactgggttctactatctaccatcctcccaaccctaattccacccc 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 303 ttttggagttactttactgggttctactatctaccatcctcccaacccttattccacccc 244
Query: 361 aatcccttttaactccccaacactatgtactagagaaagaagg 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatcccttttaactccccaacactatgtactagagaaagaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
