BAC Information

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BAC

Clone NameMSMg01-046L21
Chromosome7 (Build37)
Map Location 112,341,824 - 112,342,216
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685
Downstream geneOlfr686, EG668035, Olfr688, Olfr689, Olfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046L21.T7 (MSMg01no046_l21.b1)MSMg01-046L21.TJ (MSMg01no046_l21.g1)
ACCAG277046AG277047
length706705
length of high quality
(start - end)		554 (43 - 596)622 (73 - 694)
definitionCHROMAT_FILE: MSMg01no046_l21.b1 PHD_FILE: MSMg01no046_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:58 2005CHROMAT_FILE: MSMg01no046_l21.g1 PHD_FILE: MSMg01no046_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTTTCCATACTTACTATTAAATATGTTGACTGAAGTCTATAGCATTTA
TGATCATTATCAACACTTCCATCACGATGTACTTAATAAATAATAACCCC
ACAGCTCACAAGGATTGTTGTGTCATACTTAGTATAGTGCATGGAGGTGG
TAGTTTAAAGAGATGTTTCTCAGATTCTGTGACACCCAAAAAACCCATCA
TAAAATTAAGATGTTGTAAGTCATGAATATACTTTATACACCTAACCTGT
TGAACACCCAAGGTTAGCAGCATAGTGTACCATAGATATTATATTTTTTA
CCTTTATGACTACACAGCTACAGGGAAAGCAGAGCTCAATGACATTGTGC
AGCATTGGAAGAGAACACTATCATACAACAGTAACTTGGAAAACATCAAA
ATTCAAAATTATATGGCTTGGACTGAATGCATAATAGTTTTGTGCCACTG
GAAAGATGAACATTAGGAAGTTGAAAACTATGTGAAAACTATTTACTTGA
TGGATTATGTAGCTTCCTACAGTGTGTGGGTGAAATAGTTGTTGACTAGC
AGAAGGAAAGGATTATGAGCTGAAGCACTGCTGTCATGGAAACTGTTAAC
ACTGGTTACGTGATGAGCAACTGCTTAGTATATTTTAAAATTTAAATGAC
GTGTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTATAATGTTAAGAATAATCTCATTG
CTGTCTTTTCCTAGGATTCAAGGGATTATGATTAAAAAAATGCTGAGTGG
TGGGATAATCAAGAGGGAACCTGGGATGGGTGATTGATTTGATATTTAAA
TAAATGACTGGACTTTGGTCTTCAAGAGTGGGGCTGTCTAATTATCTTCA
GAAAGCTGCCTCTATCAGAAGACAGGCTATCATCTTGTACCCACAATTTG
ACTCTAGTTGTTCTTTTCGCTGGTCCTGAACACCACTTCCTCAAAATTCC
TCTATAAGCTGAGGCTGGTCCTTGGCACAGGCCAGATCCAATTCAACTAA
ATGTAATTTATAGATTTAGTGAAATCTCACTCAAAATTCCCATGACATTC
TTCAACAAACAGAAACCAAAATATCCTACAACTCTTATGGAAACACAAAA
TACCCTTGATAGCCTAAGAAACAATGAACACACACACACACACACACAAA
ATAAAAGAAAAACAAAAAGGAAAAACAATGCTGGAGTGATTACCATTCTA
CATTTCAAGATATGTTACAGAGCTATAGTAACAAAAAAGAACATGAAAAT
CTCCTTTAGGTGTGCAATGTCATTTCATTATAAACTAATTTGCATTTCCT
GCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_l21.b1 MSMg01no046_l21.b1 CHROMAT_FILE:
MSMg01no046_l21.b1 PHD_FILE: MSMg01no046_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:58 2005
         (554 letters)



>mm_chr7_112341824_112342778
          Length = 955

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%), Gaps = 1/393 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctttccat-acttactattaaatatgttgactgaagtctatagcatttatgatc 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggaattctttccatcacatactattaaatatgttgactgaagtctatagcatttatgatc 334

                                                                       
Query: 64  attatcaacacttccatcacgatgtacttaataaataataaccccacagctcacaaggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 attatcaacacttccatcacgatgtacttaataaataataaccccacagctcacaaggat 274

                                                                       
Query: 124 tgttgtgtcatacttagtatagtgcatggaggtggtagtttaaagagatgtttctcagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgttgtgtcatacttagtatagtgcatggaggtggtagtttaaagagatgtttctcagat 214

                                                                       
Query: 184 tctgtgacacccaaaaaacccatcataaaattaagatgttgtaagtcatgaatatacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tctgtgacacccaaaaaacccatcataaaattaagatgttgtaagtcatgaatatacttt 154

                                                                       
Query: 244 atacacctaacctgttgaacacccaaggttagcagcatagtgtaccatagatattatatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atacacctaacctgttgaacacccaaggttagcagcatagtgtaccatagatattatatt 94

                                                                       
Query: 304 ttttacctttatgactacacagctacagggaaagcagagctcaatgacattgtgcagcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ttttacctttatgactacacagctacagggaaagcagagctcaatgacattgtgcagcat 34

                                            
Query: 364 tggaagagaacactatcatacaacagtaacttg 396
           ||||||||||||||||||||||||| |||||||
Sbjct: 33  tggaagagaacactatcatacaacactaacttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space:   514080
Effective search space used:   514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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