Query= MSMg01no047_f06.b1 MSMg01no047_f06.b1 CHROMAT_FILE:
MSMg01no047_f06.b1 PHD_FILE: MSMg01no047_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:39 2005
(607 letters)
>mm_chr7_123447876_123448882
Length = 1007
Score = 681 bits (352), Expect = 0.0
Identities = 583/807 (72%), Gaps = 221/807 (27%)
Strand = Plus / Plus
Query: 22 tggctgcctttggatcacgatgtagaactctcagcaacatctccagtaccatgctggtct 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggctgcctttggatcacgatgtagaactctcagcaacatctccagtaccatgctggtct 60
Query: 82 ttatgttgcctgtttcctgccatgacgacgatggactaaacctttgaaactgtaagccac 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttatgttgcctgtttcctgccatgacgacgatggactaaacctttgaaactgtaagccac 120
Query: 142 ccccaattaaatgtcctttatatgagccgccttggtcatggggtctcttcacagcaataa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccccaattaaatgtcctttatatgagccgccttggtcatggggtctcttcacagcaataa 180
Query: 202 aagcctaagacaccctccctctacccacacaatctccagctatcagccaatgcctggacc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcctaagacaccctccctctacccacacaatctccagctatcagccaatgcctggacc 240
Query: 262 cttctttgcagcaaaacttccaggaag--------------------------------- 288
|||||||||||||||||||||||||||
Sbjct: 241 cttctttgcagcaaaacttccaggaaggggctggtgagatggctcagtgggtaagagcac 300
Query: 288 ------------------------------------------------------------ 288
Sbjct: 301 ccgactgctcttcggaaggtcaggagttcaaatcccagcaaccacatggtggctcacaac 360
Query: 288 ------------------------------------------------------------ 288
Sbjct: 361 catccataacgagatctgactccctcttctggagtgtctgaggacagctacagtgtactt 420
Query: 288 ------------------------------------------------------------ 288
Sbjct: 421 acatataataaataaataaatattaaaaaaaaaaaagagaagaattaaaaaaaaaaactt 480
Query: 289 --------atgtactgcccttcctggacaggtgtttcttacccatcttaccatgggtggc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaggaagatgtactgcccttcctggacaggtgtttcttacccatcttaccatgggtggc 540
Query: 341 agtctcctgttctggaggtccctgtgactacacatcttcttaccttctcagtctgtcctc 400
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 541 agtctcctgttctggaggtccctgtgactacacatcttctcaccttctcagtctgtcctc 600
Query: 401 ttaagtttgcctttcctgatctcagccactacccgcccccaggcttagagcattgttctg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttaagtttgcctttcctgatctcagccactacccgcccccaggcttagagcattgttctg 660
Query: 461 cttagtttctgtagcctgggaagagggagcctcaactgaagactgtcctgcagtggacat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttagtttctgtagcctgggaagagggagcctcaactgaagactgtcctgcagtggacat 720
Query: 521 gtctgcggngaattgtcttgactgatgattgatgtgggagggcccagcccactgtggacc 580
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 721 gtctgcggggaattgtcttgactgacgattgatgtgggagggcccagcccactgtggacc 780
Query: 581 attgtatcctacacatgtaagcctaag 607
|||||||||||||||||||||||||||
Sbjct: 781 attgtatcctacacatgtaagcctaag 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_f06.g1 MSMg01no047_f06.g1 CHROMAT_FILE:
MSMg01no047_f06.g1 PHD_FILE: MSMg01no047_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:39 2005
(601 letters)
>mm_chr7_123479850_123480850
Length = 1001
Score = 1006 bits (520), Expect = 0.0
Identities = 535/540 (99%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 1 aattcccagcaaccacatggtggctcacaaccatctactagaggatctgatgacttcttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aattcccagcaaccacatggtggctcacaaccatctactagaggatctgatgacttcttc 480
Query: 61 cagtgggcagatatatatgcagcagagcattcatacattaaataaaaagcctctggctcc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cagtgggcagatttatatgcagcagagcattcatacattaaataaaaagcctctggctcc 420
Query: 121 caaaatcttcagagagagagatggcttatgtaagcttatcctttgaaataactgagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caaaatcttcagagagagagatggcttatgtaagcttatcctttgaaataactgagtttt 360
Query: 181 gcctgagtgccaagctgtttgccggtactagagttcaaactattgcaggtagtgggctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcctgagtgccaagctgtttgccggtactagagttcaaactattgcaggtagtgggctag 300
Query: 241 agagatggcttagtgctacaatggctttctgttgtagaagactagagtttggttcccagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agagatggcttagtgctacaatggctttctgttgtagaagactagagtttggttcccagt 240
Query: 301 acaaagtacaagtgcttattactctagttcttacccaatatcgtcttctggcctctgggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 acaaagtacaagtgcttattactctagttcttacccaatatcgtcttctggcctctgggc 180
Query: 361 actgcactcagcttgcacagctgtataaacaagtaatttaaaaaggggggggggtggcta 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 179 actgcactcagcttgcacagctgtataaacaagtaattttaaaaggggggggg-tggcta 121
Query: 421 gagagaaggctaaggggttaagagcacttactggtcttgcagaggacttggtttcagttt 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120 gagagaaggctaaggggttaagagctcttactggtcttgcagaggacttggtttcagttt 61
Query: 481 caaacatccatgtagcaactaagaattttctgttaactccagttccaaaatatctgatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 caaacatccatgtagcaactaagaattttctgttaactccagttccaaaatatctgatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
