BAC Information

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BAC

Clone NameMSMg01-047M05
Chromosome7 (Build37)
Map Location 122,829,077 - 122,948,897
singlet/doubletdoublet
Overlap geneSox6
Upstream geneLOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneLOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047M05.T7 (MSMg01no047_m05.b1)MSMg01-047M05.TJ (MSMg01no047_m05.g1)
ACCAG277714AG277715
length724726
length of high quality
(start - end)		626 (46 - 671)647 (77 - 723)
definitionCHROMAT_FILE: MSMg01no047_m05.b1 PHD_FILE: MSMg01no047_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:10 2005CHROMAT_FILE: MSMg01no047_m05.g1 PHD_FILE: MSMg01no047_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,829,077 - 122,829,697)(122,948,251 - 122,948,897)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGGATCCCATTTGGGCTCGGAATCTTGTGTTCAATAGGAAAAG
TTTTGCTCTGGTTGGCAAGAGGGCTCAGCTGATTAAGGTGCTTGCCATCC
AGCCTGACCACCCAAGTTCAACCCCACAGACCCACGAGGTAGAAAGATAG
AACTGACTCCCATAAGTTGTCCTCTGTCCTGCACAAGGGCACCAAGGCAA
GTGACCACACCTACACACCTCCTGTTTTCTCCATGAAATGGAACACAGGA
ATGCAGAATGCCTCCTCAGAGTGCTTCCTGCTGTTTTACTTTCTACTCTG
AAAGGGGATGGTGTTAACTGCTCTACTCTTTCATTGATGGCTCATCAGTT
ACTTCTTATGGTATGTCAGGTGAGAGTCTGTAGAGAATGCTCCTGCAGGT
CACAAAGATCTCTTTCCCTGTTTCCTGACAACCACACTGAATTTACACAG
AGACCTGGCACAAGCAACAAGCCTTTTGGTAGAATACATTCCCACATCCA
CCTAAAAGGGTAGCCTAAAGCCTGTTAGCCACAGCAGAAAGACACACAGT
GCACAGTGAGGGCTAAACAACAGGCACCATGCTTCCAGGCTAAGGCTCAT
TGGCACAAACTGTGCCTGATAAAATCAAAGGGCTCTTTTCAGTAAGCAGT
AGAAAAGAAATCCAGGGTTCTTGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAAAGCTGGCAAACCATAATT
AACAAGGTGTATTTGATTCATGGACTCCTAAAGCAGGTGACTTGGGTAGA
GTGATGGGAACAAGGGTTTCACCAAAGTTGATTGTCTGTGCTTCCTAAAG
TACAGCTCAGTTGCTGTAGGAAAGTGTCAAGGAGGATTGCTAAGACGTGG
AAGAGTGCCAAGGTAAGGTTACCTACACATGCTTGCTGTGCAAACCTGAC
ACGAGTTCAATTTCCAGAATCCACTCCTGAATGTTGTCCTCTGGTCTCCA
CATACATTACTCGGCAAGTGGCCTCTTGCATCTCTGATACCTCTTCCCAC
CCCAATATTAAAAATGAACAATAAGAAAGGATAATACTAAGGAAAGAAAC
AAATGAGGACATAATCAGTTAAATTGAAGACTATATAATCATTTATGTGT
AAAAATTAGTAAGCATGATCCAGTAGTAATCTATGATTTATTTAATAAAC
TATGTGACAGCAAGATGGCTTTGCAGATAAAGGTGCTTGCAGCTAAGTTA
AATTTTAGGACCTACATAGTTGAGGAGAGAACCTGCTCCGGCAAGTAGTT
TTCTGGCCTCCACATGTGCACGCGCACATGTGCACACAAGCGCATGCACA
TACGCACTGATAGAAATATAACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_m05.b1 MSMg01no047_m05.b1 CHROMAT_FILE:
MSMg01no047_m05.b1 PHD_FILE: MSMg01no047_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
         (626 letters)



>mm_chr7_122828874_122829899
          Length = 1026

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaaggatcccatttgggctcggaatcttgtgttcaataggaaaagttttgctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaggatcccatttgggctcggaatcttgtgttcaataggaaaagttttgctc 263

                                                                       
Query: 64  tggttggcaagagggctcagctgattaaggtgcttgccatccagcctgaccacccaagtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggttggcaagagggctcagctgattaaggtgcttgccatccagcctgaccacccaagtt 323

                                                                       
Query: 124 caaccccacagacccacgaggtagaaagatagaactgactcccataagttgtcctctgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaccccacagacccacgaggtagaaagatagaactgactcccataagttgtcctctgtc 383

                                                                       
Query: 184 ctgcacaagggcaccaaggcaagtgaccacacctacacacctcctgttttctccatgaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgcacaagggcaccaaggcaagtgaccacacctacacacctcctgttttctccatgaaa 443

                                                                       
Query: 244 tggaacacaggaatgcagaatgcctcctcagagtgcttcctgctgttttactttctactc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggaacacaggaatgcagaatgcctcctcagagtgcttcctgctgttttactttctactc 503

                                                                       
Query: 304 tgaaaggggatggtgttaactgctctactctttcattgatggctcatcagttacttctta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaaaggggatggtgttaactgctctactctttcattgatggctcatcagttacttctta 563

                                                                       
Query: 364 tggtatgtcaggtgagagtctgtagagaatgctcctgcaggtcacaaagatctctttccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tggtatgtcaggtgagagtctgtagagaatgctcctgcaggtcacaaagatctctttccc 623

                                                                       
Query: 424 tgtttcctgacaaccacactgaatttacacagagacctggcacaagcaacaagccttttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtttcctgacaaccacactgaatttacacagagacctggcacaagcaacaagccttttg 683

                                                                       
Query: 484 gtagaatacattcccacatccacctaaaagggtagcctaaagcctgttagccacagcaga 543
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtagaatacattcccacatccacttaaaagggtagcctaaagcctgttagccacagcaga 743

                                                                       
Query: 544 aagacacacagtgcacagtgagggctaaacaacaggcaccatgcttccaggctaaggctc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagacacacagtgcacagtgagggctaaacaacaggcaccatgcttccaggctaaggctc 803

                                
Query: 604 attggcacaaactgtgcctga 624
           |||||||||||||||||||||
Sbjct: 804 attggcacaaactgtgcctga 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_m05.g1 MSMg01no047_m05.g1 CHROMAT_FILE:
MSMg01no047_m05.g1 PHD_FILE: MSMg01no047_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:10 2005
         (647 letters)



>mm_chr7_122948051_122949097
          Length = 1047

 Score = 1228 bits (635), Expect = 0.0
 Identities = 644/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaaagctggcaaaccataattaacaaggtgtatttgattcatggactcctaaagcag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 847 acacaaagctggcaaaccataattaacaaggtgtattcgattcatggactcctaaagcag 788

                                                                       
Query: 61  gtgacttgggtagagtgatgggaacaagggtttcaccaaagttgattgtctgtgcttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gtgacttgggtagagtgatgggaacaagggtttcaccaaagttgattgtctgtgcttcct 728

                                                                       
Query: 121 aaagtacagctcagttgctgtaggaaagtgtcaaggaggattgctaagacgtggaagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aaagtacagctcagttgctgtaggaaagtgtcaaggaggattgctaagacgtggaagagt 668

                                                                       
Query: 181 gccaaggtaaggttacctacacatgcttgctgtgcaaacctgacacgagttcaatttcca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 667 gccaaggtaaggttacctacacatgcttgctgtgcaaacctgacacgagttcgatttcca 608

                                                                       
Query: 241 gaatccactcctgaatgttgtcctctggtctccacatacattactcggcaagtggcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaatccactcctgaatgttgtcctctggtctccacatacattactcggcaagtggcctct 548

                                                                       
Query: 301 tgcatctctgatacctcttcccaccccaatattaaaaatgaacaataagaaaggataata 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgcatctttgatacctcttcccaccccaatattaaaaatgaacaataagaaaggataata 488

                                                                       
Query: 361 ctaaggaaagaaacaaatgaggacataatcagttaaattgaagactatataatcatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctaaggaaagaaacaaatgaggacataatcagttaaattgaagactatataatcatttat 428

                                                                       
Query: 421 gtgtaaaaattagtaagcatgatccagtagtaatctatgatttatttaataaactatgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtgtaaaaattagtaagcatgatccagtagtaatctatgatttatttaataaactatgtg 368

                                                                       
Query: 481 acagcaagatggctttgcagataaaggtgcttgcagctaagttaaattttaggacctaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acagcaagatggctttgcagataaaggtgcttgcagctaagttaaattttaggacctaca 308

                                                                       
Query: 541 tagttgaggagagaacctgctccggcaagtagttttctggcctccacatgtgcacgcgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagttgaggagagaacctgctccggcaagtagttttctggcctccacatgtgcacgcgca 248

                                                          
Query: 601 catgtgcacacaagcgcatgcacatacgcactgatagaaatataaca 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catgtgcacacaagcgcatgcacatacgcactgatagaaatataaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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