BAC Information

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BAC

Clone NameMSMg01-048E21
Chromosome7 (Build37)
Map Location 92,426,164 - 92,426,971
singlet/doubletsinglet
Overlap genenone
Upstream geneArnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697
Downstream geneVmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E21.T7 (MSMg01no048_e21.b1)MSMg01-048E21.TJ (MSMg01no048_e21.g1)
ACCAG278104AG278105
length1,1711,238
length of high quality
(start - end)		821 (43 - 863)746 (83 - 828)
definitionCHROMAT_FILE: MSMg01no048_e21.b1 PHD_FILE: MSMg01no048_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:06 2005CHROMAT_FILE: MSMg01no048_e21.g1 PHD_FILE: MSMg01no048_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCATAATTATNNNNTCCATTGGGCGCTNACGACTCCTATGGGAGAGGATC
CGCGGAATTCATATGAATAAAATAACCCAGTGACAGAAAGAAACTATTGT
ATATGTTGGCTCAAAATTGGACAATCACTGTTAAATAAATGATAAGAAGC
TACAAAGCTTAAGCCCAGCGAGTTATGTACAGAAGAAGTCTGAACAGTAA
AAGGTACATCTCTCTGCAAAGAAGAAATATACCATTTTTCTTATTGGGGA
CCAAGAAGACAGGAAAGGAAGTGATCTTTTGTAGGTTATGGAGAGACAGG
AGATGGAGACAAAGAGCTGGATTTAGAAAGTATTTGATGGGCAGTATGGA
AATACACTTCCTTGGAAATCACCTGGATGTATAAGGTTGATGCTTTTGAG
GACTGCACTTAACAAAGAACATAGACTGAAGTTGCCATCTTTGGTAACTA
AGCAATTGGCATGAATGGATAACTTTTGGCTTTCCTATTGGCTGAGTCAT
TTCCATGAATATACCTAAACAAGACAGACTGATGCTAGAACAGAAAGTGA
TCATTTGAAATTTGAGAGTGTCTCCACATTGACGAGGACAGTTTCCACTC
AGGTTATTAAACATAAAGAGGTGTAACTGGTGTGGGGCAGAACATAGCAC
TTACCCATGTTATATAGTCTCTTTTCCATGATCATGTATTATTTAGGCTA
TGACAAACCTAGACCTCATGTTAACAACCTGCCATCAGTGAAATGCAAAT
CAAAGAGTCCTGAGATACCATTTTACACCTGAGAGAATGGGTATAATAAA
AAAAAAAATCTCAAGTGGTGGCACATGATGTCGAGACCATGTAGAAAAAA
AAAAAAGTTCCTCCATTGTTAGTGGCAGTGCAAAATTGTACAAGGACTTT
GGAAATCAATTTGATGTTTTCTCAGAAACCTAGGAAAGCTGCTACTTTAT
TTTCCAGCTATACCCCTCCTGGTAAAATACCCCAAGTTGGCTCCCTGGTT
CCCAAAAAGAGTTTGTTCACCAATGGTCCTTTCCCCTTTTTTTTCCCAAC
CCCCAAAAAAGAAAAAACCATATTTTTTCCCCTCTTAAAAAGGGATTATA
AAAAGGCCCCTCCCCCCAAAAAAATATTTTTTTTTTCAAAGCCCAATTTT
TCTAAAATTTTTGCCTGGAGG

NNNAACTTATTTTTNTTNCCATGGAGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATGTAATCTGAGTTA
ACTATTTCAAATGATCATCAGAAAAACTGGTTTGATGAACTAGGCTTGTT
AGAAAATTTGCCCAAGAGGTTTCCTGTCTGATGTTCATGTATTCTGACAT
AAGGAATATGGATAAAAAGGAAAATTATGAAGGAAGTTATTACCACTTAT
TTGTTACCTGAACATAGGAACTCAGATGCCAAGCCTAAGGACAGAATGCT
TAAGAATCCTCAGCCGGGCATGGTGGCACATGCCTTTAATCCCAACACTT
GGGAGGCAGAGGCAGGTGAATTGCTGAGTTCGAGGCCCGACTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACATTGTCTCAAAA
AAAAAAATCCTCTAGAGGCAAACAAGGAACTGAAAATTAAATAGCTAAGA
GAAGTACATTTGTCCTTTAGTAGTAGGTACAGTAATAAATAGTGGCACCT
GGATGGATTCACAAAATATTAAAACGTGAGATTCTGTCTATCTGAATGTA
TGTGCTACATTTTACTCAGGCAGATAACTTGCTGACATGAAAAAGATGTT
CTCTTTGATTTCTGTCTTCTGCTTTGTGAAGATATCCTTTAATTTTTCGT
CATTTGAGTGACCCCAGATGCTTTTGAAGAATAAAAGACACGGAAAATAT
TCTAGGAACTAACAAATGTTATTGTTTCTTCTCTATTTCCACAAAGCATG
GTTATGTGATGAATGACTATTTCACTTGNAATCTAGACNAGAAGTGTGTG
CATACTTCATTTCCATATTTTACTTTATCGTATGAGATAATACATTATAG
AGATGCTGGGATGTANACCATGATACCATGGGGTTTCTGTCTCTTCCTTC
CTAAGAGATAACCAAAATTTTTCTTATGCTTTAAGGGAAAAAAATTTTTT
CAATTTGGTTGGTTTATGAGAAACCCATTGTTTTTTTTTTTGTAGTAACA
ATTTTCAAAAAAAGCTGAAAAGAAAGACCAGCCCTATTTTCCTTTTTTAT
ATAAAAAACCCCCCCCATTTGGTCGTTCCCAATTATTTTTTTTTTTGATT
TACGGGGAAAAAATTGAAGAGAAAATGGTTTTTTTTTTTTTTTTTAAAAA
ACAACCAAAAAGGGACTTTTTTTTTCTTTATAGGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e21.b1 MSMg01no048_e21.b1 CHROMAT_FILE:
MSMg01no048_e21.b1 PHD_FILE: MSMg01no048_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:06 2005
         (821 letters)



>mm_chr7_92425949_92427169
          Length = 1221

 Score = 1464 bits (757), Expect = 0.0
 Identities = 797/813 (98%), Gaps = 9/813 (1%)
 Strand = Plus / Plus

                                                                        
Query: 13   gaattc-atatgaataaaataacccagtgacagaaagaaactattgtatatgttggctca 71
            |||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 216  gaattcaatatgaataaaataacccagtgac----agaaactattgtatatgttggctca 271

                                                                        
Query: 72   aaattggacaatcactgttaaataaatgataagaagctacaaagcttaagcccagcgagt 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  aaattggacaatcactgttaaataaatgataagaagctacaaagcttaagcccagcgagt 331

                                                                        
Query: 132  tatgtacagaagaagtctgaacagtaaaaggtacatctctctgcaaagaagaaatatacc 191
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332  tatgtacagaagaagtctgaacagtaaaaggtacatctctctgcgaagaagaaatatacc 391

                                                                        
Query: 192  atttttcttattggggaccaagaagacaggaaaggaagtgatcttttgtaggttatggag 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  atttttcttattggggaccaagaagacaggaaaggaagtgatcttttgtaggttatggag 451

                                                                        
Query: 252  agacaggagatggagacaaagagctggatttagaaagtatttgatgggcagtatggaaat 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  agacaggagatggagacaaagagctggatttagaaagtatttgatgggcagtatggaaat 511

                                                                        
Query: 312  acacttccttggaaatcacctggatgtataaggttgatgcttttgaggactgcacttaac 371
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  acatttccttggaaatcacctggatgtataaggttgatgcttttgaggactgcacttaac 571

                                                                        
Query: 372  aaagaacatagactgaagttgccatctttggtaactaagcaattggcatgaatggataac 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  aaagaacatagactgaagttgccatctttggtaactaagcaattggcatgaatggataac 631

                                                                        
Query: 432  ttttggctttcctattggctgagtcatttccatgaatatacctaaacaagacagactgat 491
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 632  ttttggctgtcctattggctgagtcatttacatgaatatacctaaacaagacagactgat 691

                                                                        
Query: 492  gctagaacagaaagtgatcatttgaaatttgagagtgtctccacattgacgaggacagtt 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  gctagaacagaaagtgatcatttgaaatttgagagtgtctccacattgacgaggacagtt 751

                                                                        
Query: 552  tccactcaggttattaaacataaagaggtgtaactggtgtggggcagaacatagcactta 611
            ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 752  tccactcaggttattgaacataaagaggtgtaactggtgtggggcagaatatagcactta 811

                                                                        
Query: 612  cccatgttatatagtctcttttccatgatcatgtattatttaggctatgacaaacctaga 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  cccatgttatatagtctcttttccatgatcatgtattatttaggctatgacaaacctaga 871

                                                                        
Query: 672  cctcatgttaacaacctgccatcagtgaaatgcaaatcaaagagtcctgagataccattt 731
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  cctcatgttaacaacctaccatcagtgaaatgcaaatcaaagagtcctgagataccattt 931

                                                                        
Query: 732  tacacctgagagaatgggtataataaaaaaaaaa-atctcaagtggtggcacatgatgtc 790
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 932  tacacctgagagaatgggtataataaaaaaaaaatatctcaagtggtggcacatgatgtc 991

                                             
Query: 791  gagaccatgtag--aaaaaaaaaaaagttcctc 821
            ||||||||||||  ||||||||||| |||||||
Sbjct: 992  gagaccatgtagaaaaaaaaaaaaa-gttcctc 1023


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 821
Length of database: 1221
Length adjustment: 10
Effective length of query: 811
Effective length of database: 1211
Effective search space:   982121
Effective search space used:   982121
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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