BAC Information

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BAC

Clone NameMSMg01-048G23
Chromosome7 (Build37)
Map Location 92,426,164 - 92,426,950
singlet/doubletsinglet
Overlap genenone
Upstream geneArnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697
Downstream geneVmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418, LOC100039471, EG546981, Vmn2r-ps86, Vmn2r76, Olfr310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048G23.T7 (MSMg01no048_g23.b1)MSMg01-048G23.TJ (MSMg01no048_g23.g1)
ACCAG278204AG278205
length1,1681,218
length of high quality
(start - end)		800 (42 - 841)825 (81 - 905)
definitionCHROMAT_FILE: MSMg01no048_g23.b1 PHD_FILE: MSMg01no048_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:23 2005CHROMAT_FILE: MSMg01no048_g23.g1 PHD_FILE: MSMg01no048_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATAATTTNNNNTCCATTGGGCGCTNTAGACTCACTATGGGAGAGGATCCG
CGGAATTCATATGAATAAAATAACCCAGTGACAGAAAGAAACTATTGTAT
ATGTTGGCTCAAAATTGGACAATCACTGTTAAATAAATGATAAGAAGCTA
CAAAGCTTAAGCCCAGCGAGTTATGTACAGAAGAAGTCTGAACAGTAAAA
GGTACATCTCTCTGCAAAGAAGAAATATACCATTTTTCTTATTGGGGACC
AAGAAGACAGGAAAGGAAGTGATCTTTTGTAGGTTATGGAGAGACAGGAG
ATGGAGACAAAGAGCTGGATTTAGAAAGTATTTGATGGGCAGTATGGAAA
TACACTTCCTTGGAAATCACCTGGATGTATAAGGTTGATGCTTTTGAGGA
CTGCACTTAACAAAGAACATAGACTGAAGTTGCCATCTTTGGTAACTAAG
CAATTGGCATGAATGGATAACTTTTGGCTTTCCTATTGGCTGAGTCATTT
CCATGAATATACCTAAACAAGACAGACTGATGCTAGAACAGAAAGTGATC
ATTTGAAATTTGAGAGTGTCTCCACATTGACGAGGACAGTTTCCACTCAG
GTTATTAAACATAAAGAGGTGTAACTGGTGTGGGGCAGAACATAGCACTT
ACCCATGTTATATAGTCTCTTTTCCATGATCATGTATTATTTAGGCTATG
ACAAACCTAGACCTCATGTTAACAACCTGCCATCAGTGAAATGCAAATCA
AAGAGTCCTGAGATACCATTTTACACCTGAGAGAATGGGTATAATAAAAA
AAAAAATCTCAAGTGGTGGCACATGATGTCGAGACCATGTAGAANAAAAA
AAAAGTTCCTCCATTGTTAGTGGCAGTGCAAAATTGTACAAGGACTTTGG
AAATCAATTTGATGTTTTCTCAGAAACCTAGGAATGCTGCTACTTTATTT
CCAAGCTATACCCCTCCCTGCTATATACCCCCAAAGTGTCCCCAATGTAC
CCCAAAGAAGGTTGGTTTCACTTATGGTTCTCTCCCCTTTTTTTCTCCAA
ACCCCCCAAACAAAAAAACAAGCACTATTTTTCCCTCCCCTGATAAAAAG
GTTTATAAAAGGGGGCCCCCCTCTTCCAAAAAAAAATATTTTTTCTTTTT
GTAAACCCCATCTTTTTC

NNCCGTTTTTTTTNNNTAGATGGGAGNCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGATGTAATCTGAGTT
AACTATTTCAAATGATCATCAGAAAAACTGGTTTGATGAACTAGGCTTGT
TAGAAAATTTGCCCAAGAGGTTTCCTGTCTGATGTTCATGTATTCTGACA
TAAGGAATATGGATAAAAAGGAAAATTATGAAGGAAGTTATTACCACTTA
TTTGTTACCTGAACATAGGAACTCAGATGCCAAGCCTAAGGACAGAATGC
TTAAGAATCCTCAGCCGGGCATGGTGGCACATGCCTTTAATCCCAACACT
TGGGAGGCAGAGGCAGGTGAATTGCTGAGTTCGAGGCCCGACTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACATTGTCTCAAA
AAAAAAAATCCTCTAGAGGCAAACAAGGAACTGAAAATTAAATAGCTAAG
AGAAGTACATTTGTCCTTTAGTAGTAGGTACAGTAATAAATAGTGGCACC
TGGATGGATTCACAAAATATTAAAACGTGAGATTCTGTCTATCTGAATGT
ATGTGCTACATTTTACTCAGGCAGATAACTTGCTGACATGAAAAAGATGT
TCTCTTTGATTTCTGTCTTCTGCTTTGTGAAGATATCCTTTAATTTTTCG
TCATTTGAGTGACCCCAGATGCTTTTGAAGAATAAAAGACACGGAAAATA
TTCTAGGAACTAACAAATGTTATTGTTTCTTCTCTATTTCCACAAAGCAT
GGTTATGTGATGAATGACTATTTCACTTGGAATCTAGACAAGAAGTGTGT
GCATACTTCATTTCCATATTTTACTTTATCGTATGAGATAATACATTATA
GAGATGCTGGGATGTAGACCATGATACCATGTGGNNTTCTGTCTCTTCCT
TCCTAAGAGATAACCCAAATTTATCTTATGCTTCCATGGNAAAAAATTTT
TTTCAATTCTGGTTGCTTTATGAGAACCCAAATGTTTTTTCTTTTTGAAG
TTACAAATTTTCTAAAAAAAGTTTAAATGAAAGACACGCCCCTTTTTTCC
TTTTTTTTTAAAAAAACCCCCCCTTATTTTGCCCAATTTCAAAATAATTT
TTTTTTTGGAATTACTGGTGAAAATTGGAGAGGAAAATGTTTTTTTTGTT
TTTTTTCTTAAAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_g23.b1 MSMg01no048_g23.b1 CHROMAT_FILE:
MSMg01no048_g23.b1 PHD_FILE: MSMg01no048_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:23 2005
         (800 letters)



>mm_chr7_92425950_92427149
          Length = 1200

 Score = 1417 bits (733), Expect = 0.0
 Identities = 775/793 (97%), Gaps = 10/793 (1%)
 Strand = Plus / Plus

                                                                        
Query: 12   gaattc-atatgaataaaataacccagtgacagaaagaaactattgtatatgttggctca 70
            |||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 215  gaattcaatatgaataaaataacccagtgac----agaaactattgtatatgttggctca 270

                                                                        
Query: 71   aaattggacaatcactgttaaataaatgataagaagctacaaagcttaagcccagcgagt 130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271  aaattggacaatcactgttaaataaatgataagaagctacaaagcttaagcccagcgagt 330

                                                                        
Query: 131  tatgtacagaagaagtctgaacagtaaaaggtacatctctctgcaaagaagaaatatacc 190
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 331  tatgtacagaagaagtctgaacagtaaaaggtacatctctctgcgaagaagaaatatacc 390

                                                                        
Query: 191  atttttcttattggggaccaagaagacaggaaaggaagtgatcttttgtaggttatggag 250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391  atttttcttattggggaccaagaagacaggaaaggaagtgatcttttgtaggttatggag 450

                                                                        
Query: 251  agacaggagatggagacaaagagctggatttagaaagtatttgatgggcagtatggaaat 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451  agacaggagatggagacaaagagctggatttagaaagtatttgatgggcagtatggaaat 510

                                                                        
Query: 311  acacttccttggaaatcacctggatgtataaggttgatgcttttgaggactgcacttaac 370
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511  acatttccttggaaatcacctggatgtataaggttgatgcttttgaggactgcacttaac 570

                                                                        
Query: 371  aaagaacatagactgaagttgccatctttggtaactaagcaattggcatgaatggataac 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  aaagaacatagactgaagttgccatctttggtaactaagcaattggcatgaatggataac 630

                                                                        
Query: 431  ttttggctttcctattggctgagtcatttccatgaatatacctaaacaagacagactgat 490
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 631  ttttggctgtcctattggctgagtcatttacatgaatatacctaaacaagacagactgat 690

                                                                        
Query: 491  gctagaacagaaagtgatcatttgaaatttgagagtgtctccacattgacgaggacagtt 550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  gctagaacagaaagtgatcatttgaaatttgagagtgtctccacattgacgaggacagtt 750

                                                                        
Query: 551  tccactcaggttattaaacataaagaggtgtaactggtgtggggcagaacatagcactta 610
            ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 751  tccactcaggttattgaacataaagaggtgtaactggtgtggggcagaatatagcactta 810

                                                                        
Query: 611  cccatgttatatagtctcttttccatgatcatgtattatttaggctatgacaaacctaga 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  cccatgttatatagtctcttttccatgatcatgtattatttaggctatgacaaacctaga 870

                                                                        
Query: 671  cctcatgttaacaacctgccatcagtgaaatgcaaatcaaagagtcctgagataccattt 730
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  cctcatgttaacaacctaccatcagtgaaatgcaaatcaaagagtcctgagataccattt 930

                                                                        
Query: 731  tacacctgagagaatgggtataat---aaaaaaaaaaatctcaagtggtggcacatgatg 787
            ||||||||||||||||||||||||   ||||||| |  ||||||||||||||||||||||
Sbjct: 931  tacacctgagagaatgggtataataaaaaaaaaata--tctcaagtggtggcacatgatg 988

                         
Query: 788  tcgagaccatgta 800
            |||||||||||||
Sbjct: 989  tcgagaccatgta 1001


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 800
Length of database: 1200
Length adjustment: 10
Effective length of query: 790
Effective length of database: 1190
Effective search space:   940100
Effective search space used:   940100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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