Query= MSMg01no048_p19.b1 MSMg01no048_p19.b1 CHROMAT_FILE:
MSMg01no048_p19.b1 PHD_FILE: MSMg01no048_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:31 2005
(737 letters)
>mm_chr7_53779560_53780696
Length = 1137
Score = 1406 bits (727), Expect = 0.0
Identities = 736/742 (99%), Gaps = 5/742 (0%)
Strand = Plus / Plus
Query: 1 acctggggaagcaaagagcagccctgcacaccagaccaaaggttcaggcatgatgggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctggggaagcaaagagcagccctgcacaccagaccaaaggttcaggcatgatgggaaa 260
Query: 61 tcacagttccatccctacacatgtaggctgcttgagccagtatagaactacctagacgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagttccatccctacacatgtaggctgcttgagccagtatagaactacctagacgca 320
Query: 121 gtcacccgtgcccccagcatcgacgacttctcttactctacagagctcagatcctaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacccgtgcccccagcatcgacgacttctcttactctacagagctcagatcctaaatg 380
Query: 181 cttttttaataagagaaatcagactccccaaagaaatggcagactccggggtcagaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttttaataagagaaatcagactccccaaagaaatggcagactccggggtcagaacaa 440
Query: 241 ggaaagaacaactggaaaccgagcacctgtttgttccaagaagtaaggtgacataggggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaagaacaactggaaaccgagcacctgtttgttccaagaagtaaggtgacataggggt 500
Query: 301 cttataaagtcagggtgatgaggatatcagaaaataacacaggagccaccttgaaggggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttataaagtcagggtgatgaggatatcagaaaataacacaggagccaccttgaaggggt 560
Query: 361 ccctaccagctggggccagggggaatcggaacattaaaatgaataatggcagtattcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctaccagctggggccagggggaatcggaacattaaaatgaataatggcagtattcact 620
Query: 421 taca-----ctgaataaaacaaaagtccatgaatacatactgggtaataaatatggaagc 475
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacaatacactgaataaaacaaaagtccatgaatacatactgggtaataaatatggaagc 680
Query: 476 agggaaggctcttcttatactgggatgtcataaataataaacataagaggaataattgat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggaaggctcttcttatactgggatgtcataaataataaacataagaggaataattgat 740
Query: 536 ttagaaaagttttacaaccattgtaataacagtgagtgcagggttgaattgtcaattccc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagaaaagttttacaaccattgtaataacagtgagtgcagggttgaattgtcaattccc 800
Query: 596 cttaaaactggagatcaaaagtcctggatgagtggcaggctcacacagccccagccatct 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cttaaaactggagatcaaaagtcctggatgagtggcaggctcacacagccccagccatct 860
Query: 656 cctcacacatcactgtttagttgcacggggaanagatggtggcttcatagaaaagaaggg 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 861 cctcacacatcactgtttagttgcacggggaaaagatggtggcttcatagaaaagaaggg 920
Query: 716 acagcacctcacctgaagacac 737
||||||||||||||||||||||
Sbjct: 921 acagcacctcacctgaagacac 942
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1137
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1127
Effective search space: 819329
Effective search space used: 819329
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_p19.g1 MSMg01no048_p19.g1 CHROMAT_FILE:
MSMg01no048_p19.g1 PHD_FILE: MSMg01no048_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:31 2005
(624 letters)
>mm_chr7_53813876_53814904
Length = 1029
Score = 1094 bits (566), Expect = 0.0
Identities = 612/632 (96%), Gaps = 11/632 (1%)
Strand = Plus / Minus
Query: 1 ttccaaagtcacgtgggaagtcccttta--acattgccagctggggcttctagttgagcg 58
|||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct: 829 ttccaaagtcacgtgggaagtccctttaagaca--gccagctggggtttctagttgagcg 772
Query: 59 aatccagagcaaagcagtgtctctcggagaaggcttccttctaaggaaacaaatagagat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aatccagagcaaagcagtgtctctcggagaaggcttccttctaaggaaacaaatagagat 712
Query: 119 gacagcagcaaattggatggccgtgatatcttgcaagaactgacgggggaagttgagtca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gacagcagcaaattggatggccgtgatatcttgcaagaactgacgggggaagttgagtca 652
Query: 179 gtctc------tctctgtctctctccatggctgagagtctgggttgaacttcccatggtt 232
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gtctctctctgtctctgtctctctccatggctgagagtctgggttgaacttcccatggtt 592
Query: 233 gaacttggcactgttgccctcttcccgcgtgagataacagtaaagcctgctagaaattat 292
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 591 gaacttggcactgttgccctcttcccttgtgagataacagtaaagcctgctagaaattat 532
Query: 293 tcactgcccagctgttctcaagccttgtgtttcagagctggcgtctggtgggtgggatca 352
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 531 tcactgcccagctgttctcaagccttgtgtcacagagctggggtctggtgggtgggatca 472
Query: 353 ggccttctccagacaaggaccttggacgacacatggaagcaagcatgctggggtctgaaa 412
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggccttctccagacaaggacc-tggacgacacatggaagcaagcatgctggggtctgaaa 413
Query: 413 tgggggtgagtttgtcaactcacgataaggtagattgtgttttacaacacaatctacctt 472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 412 tgggggtgagtttgtcaactcacgataaggtagattgtgttttataacacaatctacctt 353
Query: 473 acagtatagaatagtgcattcaaacccgcgtgaagaatcgcctttggatcttaggaaact 532
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 352 acagtatagaacagtgcattcaaacccgcgtgaagaatcgcatttggatcttaggaaact 293
Query: 533 ttgggttctggttctgcagatctgaattggtctacgctggatctctaacacgtttccagc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgggttctggttctgcagatctgaattggtctacgctggatctctaacacgtttccagc 233
Query: 593 agagctggtgttgtggcctaagacctgtgctt 624
||||||||||||||||||||||||||||||||
Sbjct: 232 agagctggtgttgtggcctaagacctgtgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1029
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1019
Effective search space: 625666
Effective search space used: 625666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
