BAC Information

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BAC

Clone NameMSMg01-051E08
Chromosome7 (Build37)
Map Location 130,960,368 - 130,960,604
singlet/doubletsinglet
Overlap genenone
Upstream gene4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051E08.T7 (MSMg01no051_e08.b1)MSMg01-051E08.TJ (MSMg01no051_e08.g1)
ACCAG280090AG280091
length1,3411,396
length of high quality
(start - end)
183 (74 - 256)263 (67 - 329)
definitionCHROMAT_FILE: MSMg01no051_e08.b1 PHD_FILE: MSMg01no051_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:43 2005CHROMAT_FILE: MSMg01no051_e08.g1 PHD_FILE: MSMg01no051_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTTTGTT
CAGCTCTGAGCCCTTTCTTTTAAGGGGGTTATTTGATTTTCTGGAGTCCA
CCCTTTTGAGTTCTTTATATCCCCCGGATATTAGTCCCCTATCTGATTTA
AGATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGTCTTTTTGTCTTATT
GATGGTGTCTTTTGCCTTACAGAAGCTTTGAAGTTTCATGAGGTCCCATT
TGTCCACCCTCATTCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAAT
TCTTTTCCCTGTGCCCACATCTTCGAGACTTTTCCCTACTTTCTCCTCTA
TAATTCTCAGTGCCTCTGGTTTTCTGTGGATCTCCTTGATTTTTTTTTTT
TTGACCTTCTTACACTTCTATATTTTTGTCTTTATTTCTCCTCTTCTTTT
TTCCCCTCCCTCTTTTTGTGTATTCTTCATCTGATTTAAAATGCAGTTTT
TTCTTTTTTTTGTCTGTTTCTTTCTTCTTTCTTTCTTATTTTTTTTCTTA
TTTTCTTCTTTCTTCTTTTTTTCTTCCTTTTCTTTCTTTTATTCTTTCTT
TTTCTTTTTTTCCTTTCTTTTTTTTTTTATTCCTCTTTTTTCTCTTTTTT
TTTTTTTTTCTCCTTTCTTTTCTTTTTTTTCTCTTTTTCTCCTTTTCTTT
TTTTTCATTTTTTTTCTCTTTTTCTTCTCCTTCTTTTCCTTTTCTTTTTC
CCCTTTATCTTTTATTGTTTTTTTTTTATTTATATTTTTATTCTCTTTTT
TTTTTCCTTTTTATTTTTTTTTTTTCTTTTCTTATCTATTCTTCAATTTA
TTTTTTCTCCTTTTTCCTTTTCTTTTCCTCCTTTTTTTTTTTCTTTCTTT
CCCTTTTTTTCTTTTTTTTTTTTCTTTTTTCTCTTTCTCTTTTTTTTCTT
TCCTTTTCTCTTCCTTTTTTTCTGTTCTCTTCTTCTTTCTATTTCTTTTT
CTTTTTTTTTCTCTTTCCCTTCTTTTTTCTCCTTTTTTTTTTTTCTTTCC
CCCACAAGTGAATATTATAAATATGTTTTTTTATTATTTTTGATTTTTTT
TTTTTTTTATTTTTTTTTTTTTTTTAATTTTTTATTTTATTTATTTNTTT
TTATTTTTTTCCTTTTTTCCACTTTCTTTTATTATTTTTCTATCTTTCTC
TTTTTCTTCCCTCTCGCTTTCTCTTTTTTTTCTTTTTTTCTCTTTTTGTT
TCCCTTTCTTTTCTCATTTTATTTCTCCTTCTTTCCCTCTCTTCTCTTCT
TATTTTTTATTGTTTTTCTCCCCTTTTTTTTTTGTTTTTTA
TTTTGCTATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTTAGGATTCATCTTCCAACCATTCTTTTGA
CTTGTCCTCTAGACTGAAAGGCTTACCCCTACTATTGAAGCATTTGCTGG
CATGGGGTTATTTCATTCCTCCCTGTGGCCCACAGTTGTTTTTAATACTG
CAATATCTCCTCCAATCTCATTGTGAACATTCATTAGAACTTATTTCAAG
TGTCTCTCCTGTCCCTTGCAAGATGTCTCTCTCCTCCAGTAGTCTGTGTC
ATGTTTGATCTTTTGATGTTCTTATTTGTTGGAGGACTCAAGCCGCTCTG
TCTTTAACAAGCACTGACAGACCAGTTGACTAGCTCTGCCAATTCTTTTT
TTTTAACAGGGTTTCGTTTTTGTTTTTTTTGTTTCTTCGTCCCCTCCCTT
TTCTCTTATCCCCCCTCTCTTTTTTCTTCTTTTCCTTCTAACACTTTTCT
TTTTTCTTTTCTTTTTTTCATTTTATTTTTTATCCTATTTTTCTTCCTTT
TTCTTTTCTTTTTTTTTTTTCTTTTCTCTTTCTCATTTTTTTCTTTTCTT
CAATTTTTTTTCTTTCTTTATTTTTTTTTCTCTTTTCTTTTCTTTCTTTT
TTTTTTTTTTTTTTCTTTTACTTTCCTTTTTTTTTTTCTTTTTTATTTTT
TTTCTTCCTTTATTTTTATTTTACTCTTCTTCTTCTTCCTATTTACCCTT
CCTCCCTCCTATTTCTCTCTTTTTTTTTTTTCTTTCTATTATTTCCTCTT
TTTTTTTTTTTTTTCTTTTCTTATTTTCCTTTTATTTCTCCTTTTTATTT
TCTATTTTTTGTTTTTTTTTTTTCCTTTTTCTTTCCTATCTTTTTTTTTT
TTCTTTATTTATCTTTTACTTCTTTTTTCTTCTTTTCATTTTCTTTTCTT
TTCTATTCATTTTTTTTCTTTTTTTTATTTTTTTTTTTATCTTCTTATCT
CTTTTTATTTTTTCCTTTTCTTTCTTTCTCTTTTTCTTTTTTTTTTTTTT
TTTTTTCCCTTTCCTTTTTATTTTTTTATATTATTTATTTCTTATTTTTT
TATTCATTTATTTTTTATTTACTTATTATTTTTTTTTTTATTTTATCTCT
TTTTGTTTTTTTTTCTCTTTTTTTTTGTTTCTTCTTTCTTTCATCTACTT
CTTCTCATTTCTTTTTACTCTTTTCTCCCTCTTTTCCAATTCTCTTTTTC
CTTCCCTCTTTTTTTTTTTTTCTTATTCCCTTCCTTTACTGCTCTTCTTT
TCTTTATTTTCTTCTTTTTACTTCTTCTTTATTCTCTTTTTGTTCTTCAT
CCTCTTTCTTTTTTATTATTATCCCCTTCTCATTTTATCTCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_e08.g1 MSMg01no051_e08.g1 CHROMAT_FILE:
MSMg01no051_e08.g1 PHD_FILE: MSMg01no051_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:43 2005
         (263 letters)



>mm_chr7_130960280_130960942
          Length = 663

 Score =  348 bits (180), Expect = e-100
 Identities = 229/258 (88%), Gaps = 21/258 (8%)
 Strand = Plus / Minus

                                                                       
Query: 6   taggattcatcttccaaccattcttttgacttgtcctctagactgaaaggcttaccccta 65
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | 
Sbjct: 325 taggattcatcttccaaccattcttttgacttgtcctctagtctgaaaggcttatctttc 266

                                                                       
Query: 66  ctattgaagcatttgctggcatggggttatttcattcctccctgtggcccacagttgttt 125
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 ctattcaagaatttgctggcatggggttatttcattcctccctgtggcccacagttgtt- 207

                                                                       
Query: 126 ttaatactgcaatatctcctccaatctcattgtgaacattcattagaacttatttcaagt 185
                  ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 206 -------tgcaatatctcctccaatctcattgtgaacattcattagaatttatttcaagt 154

                                                                       
Query: 186 gtctctcctgtcccttgcaagatgtctctctcctccagtagtctgtgtcatgtttgatct 245
           ||||||             |||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtctct-------------agatgtctctctcctccagtagtctgtgtcatgtttgatct 107

                             
Query: 246 tttgatgttcttatttgt 263
           ||||||||||||||||||
Sbjct: 106 tttgatgttcttatttgt 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)