BAC Information

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BAC

Clone NameMSMg01-051L14
Chromosome7 (Build37)
Map Location 78,288,516 - 78,288,855
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051L14.T7 (MSMg01no051_l14.b1)MSMg01-051L14.TJ (MSMg01no051_l14.g1)
ACCAG280400AG280401
length1,323692
length of high quality
(start - end)
---340 (74 - 413)
definitionCHROMAT_FILE: MSMg01no051_l14.b1 PHD_FILE: MSMg01no051_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:48 2005CHROMAT_FILE: MSMg01no051_l14.g1 PHD_FILE: MSMg01no051_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCCCCTGACGCCCCCCCCNNNAAGGANNNNGAANNANNNAGNCCCTTT
GAGGACCCCCCNNGAACGGNNNGNNNNANNNGGGNCNNCNNANNAGCGGA
AGAGGAGGANGGNNNAACGGACCCCCCAAGAACCCCCCCGCACNNAGGGA
NGGGGAGACCAAGGCGGGGAGAAAGCAACCACCGGAACACCACAACCGCA
GGGCACGGACGCANACCAAGCACAGCCAACGACGGAGCCCCACCCCACAC
CCAACGCCACAAAGCACACAGACACAGCAGAATTTTTTTGCACAACGACA
CACAAAAAAAACCACCAGACGCGAACCCCGAAGAACCGCAAGAGACAGAC
CCAACCCGTTTTTTTATTTTTCCGNAGACGCAACCCCCCCCACACAAGGG
GGGAAAAAAAAAACCCCCCCCTTTTTTTTTCCCCCCCCCCCCCAAGAAAC
AGCGNCCCGTGAAAAAAAAAAAAAAGGGGGGGTCTGTCTTTTTTTTCTCT
ACTCTGATNAAATTCTCTTTATCGTATCTCCTCCTATAATACCACTGTAC
TTTCAGATCTTTTCTTATATCCTTATGTATTATCGACTATCATCTTTATT
ATGTACTCTCTACTTCATCAAACATCGTAGCACTCCCTTGCTTATTATTA
CATATCTTATCTACCACATATTGTCTTTCATTTTTTATAACCAACAATGT
CTATTCTATCTAATCTATACATCTATTAATTAACAGAGAAATTTAAAAAT
ATGATATATTTTTATTTAATATCTCAGTAGCTATCCAATCTCCTCTACCC
CACCCCCACCCCACACCTTTTTTTTTTTTTTTTTTTTTCAACACCACCAC
CACCAACAACTCCCCAGAAAACCTACAGCCTACCTACGAATCCTATACCT
AATCTCACACATAACACAACCAACTCTCTTTTTTTTTTCTTTTTTTTTTA
TCCACATGCACTATTCTTCAAAACTTCTCAACGTTCATCTATTTATTATC
TATACTCTCAGACGACACTATCAACATCTTATTCATTTTTACCTTACTAT
TCTACTCTTCATATAATTTTCGCTTCCATTTTCCTCTTGCATCCTCCTGC
TCCATTTNCAATCTATATTCTTACTAATTCCATCTCTTTCTTCTCCCATT
TCATTTCATATCTCGTCTCCTTCCATCTCCTCTTCCTAATATCTACACAC
TACTTGTACTCCCATTTATTTTACTTTATCTTTTTCTATCAATTTTCTTT
GCCCCATTTTCTTTAATTTACTATATCTGCTACACATTATCTTTCCCTAC
CAATTATCTTTAAAGCTCTTCAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGAACAGTTCATGCTTTTCCAAATT
CAAGTACTATATATCTTGTCTAAGAGATAATAAAATTGGAAAAAAAAGCT
ATAAAGGACAGGGTTACCAAATAATTGCAAACACATTGGATAAAATGATA
AAATTCAGTAATAGACATAAAAGCAACAAAACAGAATATGTTAATATGTA
ATCTCATTCCTCAAATTGACATATAGCTTAATTTATATATTTAATAATAA
TTTTTCAATATCAAGAAGTATCTTAAAAGTGGGAACTTGCCAAATATTTT
GAAAGAGTAAATACTTTCAAACTCTGTTCTAAGATCCCTTGCTGTTTACT
GCTCAATATCTTGCCCCCCCTTAATACAAGGTATATATAGGTTTCTATTT
AACACCAAGAGTAATGATTGCTTATGGAAATGTGAAAGATGACTAATGAA
GTCTATAATTTCTCTTGTTTAAATTTTTATCTCTTTGAGTGTAACTGGTT
AAATGTTGACCATGTTATTCCTTCAGATTATGGTGAATATTCTACTCTGT
GTTTCATTGTTTTGTATTACCTCTATCATCCATTTTTATGTTTCTTTACT
TTACTCTTTCCTACAATTATATTCACATATTCTTTTCGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_l14.g1 MSMg01no051_l14.g1 CHROMAT_FILE:
MSMg01no051_l14.g1 PHD_FILE: MSMg01no051_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:48 2005
         (340 letters)



>mm_chr7_78288316_78289055
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaacagttcatgcttttccaaattcaagtactatatatcttgtctaagagataataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaacagttcatgcttttccaaattcaagtactatatatcttgtctaagagataataa 260

                                                                       
Query: 61  aattggaaaaaaaagctataaaggacagggttaccaaataattgcaaacacattggataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aattggaaaaaaaagctataaaggacagggttaccaaataattgcaaacacattgaataa 320

                                                                       
Query: 121 aatgataaaattcagtaatagacataaaagcaacaaaacagaatatgttaatatgtaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgataaaattcagtaatagacataaaagcaacaaaacagaatatgttaatatgtaatc 380

                                                                       
Query: 181 tcattcctcaaattgacatatagcttaatttatatatttaataataatttttcaatatca 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattcctcaaattggcatatagcttaatttatatatttaataataatttttcaatatca 440

                                                                       
Query: 241 agaagtatcttaaaagtgggaacttgccaaatattttgaaagagtaaatactttcaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagtatcttaaaagtgggaacttgccaaatattttgaaagagtaaatactttcaaact 500

                                                   
Query: 301 ctgttctaagatcccttgctgtttactgctcaatatcttg 340
           ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgctctaagatcccttgctgtttactgctcaatatcttg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)