BAC Information

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BAC

Clone NameMSMg01-052D09
Chromosome7 (Build37)
Map Location 122,459,984 - 122,460,164
singlet/doubletsinglet
Overlap genenone
Upstream gene4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D09.T7 (MSMg01no052_d09.b1)MSMg01-052D09.TJ (MSMg01no052_d09.g1)
ACCAG280759AG280760
length703687
length of high quality
(start - end)
181 (69 - 249)92 (147 - 238)
definitionCHROMAT_FILE: MSMg01no052_d09.b1 PHD_FILE: MSMg01no052_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:45 2005CHROMAT_FILE: MSMg01no052_d09.g1 PHD_FILE: MSMg01no052_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAAGAGGGCGCGGA
ATTCCAGCCTCTCACTGATTACTCAGTTTTGGTTCAGTCCCTGAAAGGAG
CAGCATTTGTGGTTCCGTTCAGCATCCCATTCTTTAGGCTTCTCCTTAGA
CCATGGTACCCAGGTCCAGTGTATCTCTCCATGCCTTTCCCTTCCCCCAG
GTCTGCTGTGGTTTGCTGCTGAATGCTCCATTTCTTCTAAAACTGTAACA
GGAATGACTCAAGAAAGGGGATATTTTGGACAATAGAATATCATGTTGAA
AATTATGTTATATATACTAAATTCTGAAGAGTTTCACCATCTTTGGAGCT
AGTAACTGCCTTCTGAACAGAATTTTGGTGCACAAAGTTTGATACTAAAC
TGGAAGGTCAACAAGGAACGTGAGTCTAGTCAGTGATTTGTTTGCTAACA
TATATTCGCATTACAATGTTGTATGTAACCAATCGACTTTCATGTGCGTG
CTATATATATGTCCCTGTATGCATATTCTTATGTATCTACCTACCCTATA
TGCCGATCTATCCCATGCCCCATTCTGTTGTCTTTAATACTAAAATCAAA
CTAACGCTACCATTTCCCCCCCTTGCCCCCCACTTTTTTACCCCTATTTT
GTTCCCCCCCCCCCATCCCTCTCTAAATATGATAATATTGCCGCCTATTT
GCA
ATGAATTGGTAGGCCTGGAGGCGCCTGTTCAAAAAGGGGGGTGAACTATA
TAAGTTCCTGCGAAATTCCCCAGTTGGTGACATTGTATTTGAGAGGTACT
GGAACCTTTGGGACCGTGGCTTAGCTAGATGGATCACTGGGATTTGGCTT
TGAAGATGATAGACACTTTTGGTTCCTACCCAAGCTTTCAGCTTCCTGGT
TACCTTAGGACCAAATGTCTCTCTCTCCCACTACTGAGGACTAAACTGCT
TCTGCTGTTGTGAGTTCCCTTTGCCTCCTGATACTGTGAACCCAAGTAAA
TCAATCCATCCCCTGTGAACTTGCTTTCATCATACCCTACGTTAGAATGA
TCAAAGACCCCCAGGTATTAAATGCGGGCATTATACATGCTATTGATCCT
ACAGATGCACTCCCAATCACCGATAATATTTCAGCGTCTTATCAAGGAAA
GAACTGAAAATCCTTTCCCTTGGAAGCGGTTTATCTACCATCCATTTCTG
ATTGGAATACTCCATACTTCTCATTTCGTTTGTTGCGCGTAGTTGAATTT
GCGTCTGTCTTGAACCTGTCTTGTCTGCCCCCGTGTGTCTGTTTGCCGTT
TGCCTGTGTTCTCCGCCCGTATCTACCCCCTCTAAACGTTTTACTCTATT
GCCCTCGCCTATTTCCCCATTCTTTATATTTTCCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d09.b1 MSMg01no052_d09.b1 CHROMAT_FILE:
MSMg01no052_d09.b1 PHD_FILE: MSMg01no052_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:45 2005
         (181 letters)



>mm_chr7_122459784_122460364
          Length = 581

 Score =  335 bits (173), Expect = 1e-96
 Identities = 179/181 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactcagttttggttcagtccctgaaaggagcagcatttgtggttccgttcagcatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactcagttttggttcagtccctgaaaggagcagcatttgtggttccgttcagcatccc 322

                                                                       
Query: 61  attctttaggcttctccttagaccatggtacccaggtccagtgtatctctccatgccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 attctttaggcttctccttagaccatggtacccaggtccagtgtaactctccatgccttt 262

                                                                       
Query: 121 cccttcccccaggtctgctgtggtttgctgctgaatgctccatttcttctaaaactgtaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttccccaaggtctgctgtggtttgctgctgaatgctccatttcttctaaaactgtaa 202

            
Query: 181 c 181
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)