BAC Information

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BAC

Clone NameMSMg01-052N01
Chromosome7 (Build37)
Map Location 72,853,132 - 72,853,499
singlet/doubletsinglet
Overlap genenone
Upstream geneApba2, 5730507A09Rik, Ndnl2, Tjp1, Gm1693, EG665234, Tarsl2, Tm2d3
Downstream geneLOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052N01.T7 (MSMg01no052_n01.b1)MSMg01-052N01.TJ (MSMg01no052_n01.g1)
ACCAG281207AG281208
length695686
length of high quality
(start - end)
491 (47 - 537)372 (69 - 440)
definitionCHROMAT_FILE: MSMg01no052_n01.b1 PHD_FILE: MSMg01no052_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:32 2005CHROMAT_FILE: MSMg01no052_n01.g1 PHD_FILE: MSMg01no052_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCAAGGCCCATACCCAAACATGATAAAAGCAATCAACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTGGACAAGGCTGGCCACTTTCTCCCTACCTATTCAACATTGTA
CTTGAAGTCCTAGCCAGAGCAATTCAACAACAAAAGGAGATCAAGGGAAT
ACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATGTAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
AAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCA
ATGGTCTTTCTCTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGTGTGA
CTCTAACTAAGGAAGTGAAAGATTTGTATGATAAAAACTTCAAGTCTCTG
AACAAAGAAATTAAAGAAGATCTCAGAAGATGGAACGATCTCCCATGCTC
ATGGATTGTTAGGATCAACATTGCAAAAATGGTTACCTTGTCAAAAGCCA
CCCACAGATTCAATGCCATCCCCCTCAAAATTCCCCCTTCATTCC
GATGAAGTGGGAGGCTGGCGGCGCCTGTCTCCAAATTGGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGCTTTTATCTAACTGCTAGAAATGTTCCTA
TAGTTCAGGTTGAGTCCATTTCTGAGTTTTTGGACTGCCTTTTGGAGTTT
GGGAAATTGAAGTCTCCTTTGGACCCAGCAATAAGTAGAGGTTATTTAAA
ATAACCCTTTTATTAATTTATTAAGCTTATTTTCTTAAAAGTTTAGGTAT
CAAAACCCAGGGCCCTGAGCATGCGTCATCTTGAGAATGTTGTATATTAT
ATACTATATATTATGTATATTCTATATATTACATATTATATATTTCATAG
TACATTTTTCATATATTATATCATGAATTAATATATATACACATATTTTT
AAGTGAATAAGTTATATTATATATATGACATGTATATCATAAAACTTGCA
TATGTTAAATGTTATATATATATAAATATATAATGTATTACTACATATAT
ATATATTATAAGTATGATCTTCATACTTGGCATTGCAGGATGTAAAATGG
ACAAAAAGGCTGTATATTCATCCCAGAGCGCGCCTATTACAGTGAGCTCA
AATCCCTGTTCCCTCCATATGGCAAGGGCTTCCTGAAAGCCCTATCTTTG
TGCCTACACTTTGTTCCACAATATATGTTCCCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_n01.g1 MSMg01no052_n01.g1 CHROMAT_FILE:
MSMg01no052_n01.g1 PHD_FILE: MSMg01no052_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:32 2005
         (372 letters)



>mm_chr7_72853074_72853849
          Length = 776

 Score =  571 bits (295), Expect = e-167
 Identities = 349/371 (94%), Gaps = 11/371 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  tctaactgctagaaatgttcctatagttcaggttgagtccatttctgagtttttggactg 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctaactgctagaaatgttcctatagttcaggttgagtccatttctgagtttttggactg 367

                                                                       
Query: 70  ccttttggagtttgggaaattgaagtctcctttggacccagcaataagtagaggttattt 129
           |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct: 366 ccttttggagtttgggaaattgaagtctcctttggacctagcaataggtaaaggttattt 307

                                                                       
Query: 130 aaaataacccttt----tattaatttattaagcttattttcttaaaagtttaggtatcaa 185
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaataaccctttcttttattaatttattaagcttattttcttaaaagtttaggtatcaa 247

                                                                       
Query: 186 aacccagggccctgagcatgcgtcatcttgagaatgttgtatattatatactatatatta 245
           ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct: 246 aacccagggccctgagcatgcatcatcttgaaaatgttgtatattacatactatatatta 187

                                                                       
Query: 246 tgtatattctatatattacatattatatatttcatagtacatttttcatatattatatca 305
           | || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 186 tata-attctatatattacatattatatatttcacagtacatatttcatatattatatca 128

                                                                       
Query: 306 tgaattaatatatatacacatat-ttttaagtgaataagttatattatata---tatgac 361
           ||||||||||||||| || |||| |||||||||||||||||||||||||||   ||||||
Sbjct: 127 tgaattaatatatatccatatatattttaagtgaataagttatattatataatgtatgac 68

                      
Query: 362 atgtatatcat 372
           ||  |||||||
Sbjct: 67  at--atatcat 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 776
Length adjustment: 9
Effective length of query: 363
Effective length of database: 767
Effective search space:   278421
Effective search space used:   278421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)