BAC Information

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BAC

Clone NameMSMg01-053C06
Chromosome7 (Build37)
Map Location 65,605,126 - 65,605,522
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg3, Gabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053C06.T7 (MSMg01no053_c06.b1)MSMg01-053C06.TJ (MSMg01no053_c06.g1)
ACCAG281443AG281444
length7011,009
length of high quality
(start - end)
401 (42 - 442)---
definitionCHROMAT_FILE: MSMg01no053_c06.b1 PHD_FILE: MSMg01no053_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:58 2005CHROMAT_FILE: MSMg01no053_c06.g1 PHD_FILE: MSMg01no053_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTCTGTGCCGTTTTAGTTTAATCTGATCAACTAATTTTCAATATTTA
ATTTTCTATTTACCCTGGAGAGTACAGCTTCCATTGAAACATGTTAATTT
TAGGTTAACATTGGTGTTTGTAAAATGCCATGCCTGGGTAGATTTTGCAT
AGGTATTTGACTTGGAATGATGGACGGTGAAGATACCCTGGATATGGGCT
ATTCCCTGCTAACAGCATCTTGGAACACTGAATATTATCAGTTTCAGTTA
GATTAAATGTATCTAGCAAACCAAAGGATCTAACCCTAATAGGCATGCTG
TTGCCAGACTATGCAGTCCAAGTACCCTAAGCACCATTTCAGAGACCAGC
TTTAAACCCAATGTACAAAGACAGACTGATGCTTTGTTGTGCTGACAGGA
TCTCAAGAGATCTGGGAAAGAGCTGCCCCTTACTGTCGAGAGCCAATGAT
ATCTTTGTGAATACCTAGAAGTTCCTATAGTCATTCATTGCTTACCTTTT
TGAACACAATGCTTACCATTTTATGTCGCCTTGACAGCCATTTTTATTGT
CCGTTGGCTTTACTCTTACTAGTATCTGCTTCCTGATCCTTGCCTCCTCC
CAGTTCCAATATGTGTGTCACCCCCTCCCTTAAAAATATTTTTACTATTT
A
ATCGCTTTTGTTTTNGCCNNNNNNATATACGTGTTTTCAAAAAAGGGGGG
GNGNNNNNCNNTTNTCTTTTCCCCAAAAGAAGGGTTCGGGNAAACGTAGG
CACGGACGCAAACACAAATCACTCTTCGCACATTTCCCCACCCCCCCTGG
CCTTTCACCATTAGATTGTGTCACACCCGAAACCTCTACCCGTAACCTAG
ATTTATTAAACCGANTATCTTATTNCGTTTGATGTCTTTGTCGTACCTAA
TTTTACATTCGTACCTTTTAATTCTCCTTACCCGTGTACACTAAATTAGC
CCCACAATTAGACAACGCGAATGGACATTTCGCTGCTTCACTCTCGCGTC
GCGTACGGTGCGTGGGGGGTGGAAGGGGGAGGCGATGGAGGATCGAAGAG
TGTTGGCTAGGTGCCACTGAGCGCCCGCACGCGAGGAGTCGCAGAAACTG
CCCTAATATACGGTTATCGCAAATCACGACCCAACACAAACTTATCATCG
ACCCACTTATTATCACGCTATTTACGAGCCACATTTCACCACACTCACTA
CAATTATTGCCCACAACTATTCCACCTTTTTAACGATAGGCAGATCACTC
GCCGCGTAAATCACGAGCGGGCGGTTCATTATTATTCCGCCGCGCGCTCT
ACTATTTGACACAATTCTTCAGGAATTACGGTGGCACGATACACAATGCT
GATGCACGCTCGACAATTGATCAGCGAAATGTGAGCTGACCGTTAGAGCA
CAGATGTTAAGACGAAGCTATTGCAGAGCATAGTATACCACGAGCGTAAT
TACGCAATGATGCCGGCGCGCACGGCGGTAGAGCCGCACGTGAGCGGCAG
CCGGGAGAGAGTGAGACCACTGGTTCGGCGGAGCGACTAGATGGAGAGGG
CGTGCGGTAGAGCACGGGGAGCGGTATGCCAGAGCGCGGAACGGGAGCGG
GGCGTATCGAAGAGTCGAGGAAACCGACAATAAGGGACGTCGGGAAGTTG
CCGCTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_c06.b1 MSMg01no053_c06.b1 CHROMAT_FILE:
MSMg01no053_c06.b1 PHD_FILE: MSMg01no053_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:58 2005
         (401 letters)



>mm_chr7_65604922_65605722
          Length = 801

 Score =  745 bits (385), Expect = 0.0
 Identities = 394/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctctgtgccgttttagtttaatctgatcaactaattttcaatatttaatttt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctctgtgttgttttagtttaatctgatcaactaattttcaatatttaatttt 264

                                                                       
Query: 65  ctatttaccctggagagtacagcttccattgaaacatgttaattttaggttaacattggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatttaccctggagagtacagcttccattgaaacatgttaattttaggttaacattggt 324

                                                                       
Query: 125 gtttgtaaaatgccatgcctgggtagattttgcataggtatttgacttggaatgatggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttgtaaaatgccatgcctgggtagattttgcataggtatttgacttggaatgatggac 384

                                                                       
Query: 185 ggtgaagataccctggatatgggctattccctgctaacagcatcttggaacactgaatat 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgaagataccccggatatgggctattccctgctaacagcatcttggaacactgaatat 444

                                                                       
Query: 245 tatcagtttcagttagattaaatgtatctagcaaaccaaaggatctaaccctaataggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcagtttcagttagattaaatgtatctagcaaaccaaaggatctaaccctaataggca 504

                                                                       
Query: 305 tgctgttgccagactatgcagtccaagtaccctaagcaccatttcagagaccagctttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgctgttgccagactatgcagtccaagtaccctaagcaccatttcagagaccagctttaa 564

                                                
Query: 365 acccaatgtacaaagacagactgatgctttgttgtgc 401
           |||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccaatgtacaaagacagactgatgctttgttgtgc 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)