BAC Information

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BAC

Clone NameMSMg01-053E18
Chromosome7 (Build37)
Map Location 89,783,523 - 89,783,973
singlet/doubletsinglet
Overlap gene1700129I04Rik
Upstream geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3
Downstream geneEftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053E18.T7 (MSMg01no053_e18.b1)MSMg01-053E18.TJ (MSMg01no053_e18.g1)
ACCAG281549AG281550
length687679
length of high quality
(start - end)
49 (261 - 309)451 (78 - 528)
definitionCHROMAT_FILE: MSMg01no053_e18.b1 PHD_FILE: MSMg01no053_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:10 2005CHROMAT_FILE: MSMg01no053_e18.g1 PHD_FILE: MSMg01no053_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGNGACCCGCC
GCGGAANNCNNGANNCTTACCCCAGGCGAGCGGANANCNAACNGCACNNG
GNNCAGCNNGAGGGCAGAGAAATCACCCAAAGCAGCGCCAAGCGACAGGG
ANCNANCANGGGANATTTAGAGGAGGGAGCCGCAGCACCCGACAAAGGAC
CGCGCAACACCCCGCCCCCGCGACCCGACAAACACGNACACAAACAAGCC
AAGGATTTTTTTTTCTATCCAAAATGTACCACAAATAGTGGTCACATGTC
ATAAGATCTTCACATTCCCATTTTGATGTTTTTACACGNACACGCCNGAG
NACACNCCNCGTTTTTTCTCCCCCCCCGCCCCCACATGGGATAGTAAGAT
GCAGCAAGACCTGACCCTCACAGTCTATATAATCTTACAAGTATAGGCGA
TAATTAATACAGACTTATACTTACATGCCATTATCTATGCAATTTCCACT
ACGTCGCTAATTTTTTTCATAGCCGTTCTTTAGCAACAAGATTTACTGAA
CCACAGCCAAAGCCAGTGAACATTCGAGCGGAATATAGCAAGTAGGGTAA
AGAATTAGGGGACACGGCCCACCAAGCTGGAGGCTTCCCTCCCTGGAAAG
GCAGCCAGCCATGTTTTTTTTTTTTTTTTTTCCACAA
NNAACGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTTCCTTTAAACTGAATGT
TTTGGGTCACTCTGGTATAGGCAGGTCTGCAGATTTTTGCAGTTTCACCA
GCAAGACCCTGAAAGTCATTCCGGTGAGTGGTGAGATCCTCAAAAGGCTG
GTCAGTAGGCTTATAAATTTCTTTTGGCCTTGCAAACTTGACTTCTAGCT
GATGAGGTACATAATCTCGACGATGACTTGTATCACCATTAAAAGGGCCT
ACAGAACACTTGACCACAGAGCAGGTTTTAAAGCTTTGCCTAGGCTTTAT
CTCCTGGGGAACATAGTCATCCTGAAATGTAGTTGAGTTTCCGAATTTCA
CATCTGGTGGATGGTAAGCTTGCTCTGGTTTACACAGTTCACATTTCTGA
ATATCCCAAGATCTATAATCATCTTGAAAATCAGAACAAACAAAATATTT
TAAAATACTGAGAAAAAAACTATCTTCAAAATATCCTGACTAATTTCTCG
CATTGCCAAGCATCTTCTGATTTCTTTTAGAACCCCATACCTAGGATCAA
GTATGAGGTTTTCCCTCATATTTGGTTTTCTTTGCGCCATTCATTTCCAA
CTTCCAGAGTCATCTGATTTACTACCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_e18.g1 MSMg01no053_e18.g1 CHROMAT_FILE:
MSMg01no053_e18.g1 PHD_FILE: MSMg01no053_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:10 2005
         (451 letters)



>mm_chr7_89783323_89784173
          Length = 851

 Score =  849 bits (439), Expect = 0.0
 Identities = 448/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacttcctttaaactgaatgttttgggtcactctggtataggcaggtctgcagatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacttcctttaaactgaatgttttgggtcactctggtataggcaggtctgcagatttt 260

                                                                       
Query: 61  tgcagtttcaccagcaagaccctgaaagtcattccggtgagtggtgagatcctcaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagtttcaccagcaagaccctgaaagtcattccggtgagtggtgagatcctcaaaagg 320

                                                                       
Query: 121 ctggtcagtaggcttataaatttcttttggccttgcaaacttgacttctagctgatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtcagtaggcttataaatttcttttggccttgcaaacttgacttctagctgatgagg 380

                                                                       
Query: 181 tacataatctcgacgatgacttgtatcaccattaaaagggcctacagaacacttgaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacataatctcgacgatgacttgtatcaccattaaaagggcctacagaacacttgaccac 440

                                                                       
Query: 241 agagcaggttttaaagctttgcctaggctttatctcctggggaacatagtcatcctgaaa 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcagggcttaaagctttgcctaggctttatctcctggggaacatagtcatcctgaaa 500

                                                                       
Query: 301 tgtagttgagtttccgaatttcacatctggtggatggtaagcttgctctggtttacacag 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tgtagttgagtttccgaatttcacatctgggggatggtaagcttgctctggtttacacag 560

                                                                       
Query: 361 ttcacatttctgaatatcccaagatctataatcatcttgaaaatcagaacaaacaaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcacatttctgaatatcccaagatctataatcatcttgaaaatcagaacaaacaaaata 620

                                          
Query: 421 ttttaaaatactgagaaaaaaactatcttca 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 ttttaaaatactgagaaaaaaactatcttca 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)