BAC Information

Click to search

BAC

Clone NameMSMg01-053F05
Chromosome7 (Build37)
Map Location 69,829,817 - 69,830,440
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041293, Ndn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222
Downstream geneLOC384631, LOC622243, EG622251, Chrna7, Otud7a, LOC545971, LOC100041386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F05.T7 (MSMg01no053_f05.b1)MSMg01-053F05.TJ (MSMg01no053_f05.g1)
ACCAG281570AG281571
length698700
length of high quality
(start - end)
548 (67 - 614)624 (77 - 700)
definitionCHROMAT_FILE: MSMg01no053_f05.b1 PHD_FILE: MSMg01no053_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005CHROMAT_FILE: MSMg01no053_f05.g1 PHD_FILE: MSMg01no053_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCATGAATTCTTAGGCAATGGACAGAACTAGAAAATATCATCCTGAGTGA
GGAACCCAACCCCAAATGAACACACATGGTATGCAGTCACTGATAAGTGG
ATAATTAGCCCCAAAACTCAGAATACCCAAGATACAATTCACAGACCACA
TGAAGCTCAAGAAGAAGGAAGAACAGTGTGGGTGCTTCAGTCCTTCTTAG
AAAGGGAACAAAATACTCACGGGAGCAAATATGGAGACAAAGTGTAGAGC
AAAGACTGAAGGAAAAGCCATCCAGAGACTGCCCTACCTGGGGATCCACC
CTGTATTCAGTCACCAAACCCAGACACTGTTGTGGATGCCAAGAAATGCT
TGCTGAAAGGAGCCTGATATAGCTGCCTCATGAGAGGCCCTGCCAGAGCC
TGACAAATACAGAGGTGGATGCTCACAGCCAACAATTGGACTGAGCACAA
GGTCACCAATGGAAGAGTTAAGAGAAAGTACTGAAGGAGCTGAAGGGGTT
TGCAACCCCATAGGAAGAACAACAATATCAACCAACTAGACCCCCACAGA
GTCTCCAGGGACTAAGCCACCAACCAAGGAGTACACATGGAGGAACCCAT
GGCTCCAGCCGCATATGAAGTGAGGATTTGCCTTGTCAGGCATCAATG
TTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGAATTATCCACTAAGTAGA
GTGGATAATTACTAGGAAATAATTGATTTTCTTCACTGATACGAGCAAAA
GAATATTTGGATAGTACAAAGCTCCCATTCTAGAAGTTAGCATTCTCTTA
ATAGTCTGTTAATTGGATTGTAAAATCAAATTAATTCCTCAAATGAAAAC
CTTAAAATTATCCTGTGATACCGAGGAAAAGAATATGAACCCTATTGTTA
CTGACTCAAAACATTTCCACTAAAATCACAAACAAGATCAAAATGACTAT
TCTTTCACCTCCTGCTTAATATAATATTTGAAATCTTACCTAGAGGAGTA
ACAAAAGAGAAGATAAATGAAATGCAAAAAGGGAGGAAAGATGTGAAATT
ATTTTTGTAGGTGATACAATTCTAAAATAAGATCCTCTACACTCCAACAG
AATATTATGAGAAAACACTGACAGACAAAGTTAGCAAAGAAACAGGTATA
GATTTGAAGTCCAAAAATCAGTAGCCTACCTATATACAAATAACAGACAC
ACTGAGAAAGAAGTAAAACAATGCCATTGAAAATAGCCTCAAAGTATAAT
AAATTAGAATGTCTCACCAAAAGAAGTGAAAGATTTGTACAATGAAAGCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f05.g1 MSMg01no053_f05.g1 CHROMAT_FILE:
MSMg01no053_f05.g1 PHD_FILE: MSMg01no053_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:12 2005
         (624 letters)



>mm_chr7_69829617_69830640
          Length = 1024

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagaattatccactaagtagagtggataattactaggaaataattgattttcttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagaattatccactaagtagagtggataattactaggaaataattgattttcttcac 260

                                                                       
Query: 61  tgatacgagcaaaagaatatttggatagtacaaagctcccattctagaagttagcattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatacgagcaaaagaatatttggatagtacaaagctcccattctagaagttagcattct 320

                                                                       
Query: 121 cttaatagtctgttaattggattgtaaaatcaaattaattcctcaaatgaaaaccttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaatagtctgttaattggattgtaaaatcaaattaattcctcaaatgaaaaccttaaa 380

                                                                       
Query: 181 attatcctgtgataccgaggaaaagaatatgaaccctattgttactgactcaaaacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatcctgtgataccgaggaaaagaatatgaaccctattgttactgactcaaaacattt 440

                                                                       
Query: 241 ccactaaaatcacaaacaagatcaaaatgactattctttcacctcctgcttaatataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactaaaatcacaaacaagatcaaaatgactattctttcacctcctgcttaatataata 500

                                                                       
Query: 301 tttgaaatcttacctagaggagtaacaaaagagaagataaatgaaatgcaaaaagggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgaaatcttacctagaggagtaacaaaagagaagataaatgaaatgcaaaaagggagg 560

                                                                       
Query: 361 aaagatgtgaaattatttttgtaggtgatacaattctaaaataagatcctctacactcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagatgtgaaattatttttgtaggtgatacaattctaaaataagatcctctacactcca 620

                                                                       
Query: 421 acagaatattatgagaaaacactgacagacaaagttagcaaagaaacaggtatagatttg 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 acagaatattatgagaaaacactgacagacacagttagcaaagaaacaggtatagatttg 680

                                                                       
Query: 481 aagtccaaaaatcagtagcctacctatatacaaataacagacacactgagaaagaagtaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtccaaaaatcagtagcctacctatatacaaataacagacacactgagaaagaagtaa 740

                                                                       
Query: 541 aacaatgccattgaaaatagcctcaaagtataataaattagaatgtctcaccaaaagaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacaatgccattgaaaatagcctcaaagtataataaattagaatgtctcaccaaaagaag 800

                                   
Query: 601 tgaaagatttgtacaatgaaagct 624
           ||||||||||||||||||||||||
Sbjct: 801 tgaaagatttgtacaatgaaagct 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)