BAC Information

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BAC

Clone NameMSMg01-053M02
Chromosome7 (Build37)
Map Location 137,822,021 - 137,822,282
singlet/doubletsinglet
Overlap geneTacc2
Upstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a
Downstream geneLOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053M02.T7 (MSMg01no053_m02.b1)MSMg01-053M02.TJ (MSMg01no053_m02.g1)
ACCAG281886AG281887
length692697
length of high quality
(start - end)
369 (48 - 416)264 (74 - 337)
definitionCHROMAT_FILE: MSMg01no053_m02.b1 PHD_FILE: MSMg01no053_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:45 2005CHROMAT_FILE: MSMg01no053_m02.g1 PHD_FILE: MSMg01no053_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCCCAAGCCCCGTGTTCTAATAGCTTGGGTATGGCTATCATC
TTATAACTAGAATACCCAAGATACAATATACAATTTGCAAAACACATGAA
ACTCAAGAAAAACAAAAACCAAAGTGTGGACACTTTGCTCCTTCTTAGAA
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAACT
GAGACAAAAGGATGGACCATCTAGAGACTGCCATACCTAGGGATCCATCC
CATAATCAGCCTCCAAACGCTGACACCATTGCATATGCCTGCAAGATTTT
GCTGAAAGGACCCAAATATAGCTGTCTCTTGTGAGGCTATGCCAGTGCGT
GGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGA
GTCCCCATTGGAGGAGCTAGAGAAAGTAACCAAGGAGCTAAAGGGTTCTG
CAACCCTATTGGTGGAACAACAACATGTACTAACCAGTACCCTCCGGGAG
TTTGTGTCTCTAGTTGCATATTGTAGACAAGATGTTCTTAGGGTGCCATC
ATTGTTTAAAAAGGCCCCCCGATTCCCCAAACTTTAAATGCCTCCCAATT
AGCTAACTCCCCCCCCCACAAATCGCTTCTTGTTTTGTCTTA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAGGGTGGGGCGCTGGCAGAGGGGCT
GAGTGTGAGGCCACACGGTGGTTCCCACACAGCTCCAGTCTCGGCTTAGG
AAAGAAGCAAAAACCCTGTCCTCCTCTTGCCCTGGAAAAGCTCTGGAGTC
TTGCCAGCCTTGGTAGAGGGATGGAAGCTATTTGGACCACATGGGAACAG
CTTATCAGAAAGCTTGGCAAGCCCACAGGCTGTGGTTCAGGGCAGCATTT
CCCATAGTGCACTGCTCTCTGGGCCCCCTGCATTGACACTGATGAGCCAG
CTTTATCCCTGAGAGAGCTAGACTGGCTCTCTAGACTGCTTCCTCTGGGC
CTGTTCATGTAAGCAGTCTTAACCTATGCTTCCAAGCCACTAACCTTAAG
AAATGGATTGTCCCCCCCATAGTTCAGTGATAGGTCAAGCCCGGTAGCTT
GTTTGGTTCCTATGCGTCCTACTCACTTTTCCTCTTGTCCCCTAGTTCGC
AATCGCCGGATTGTCCTGTACCCCCCCTGAAGGCGCTTTTTCTCTTCGCA
TTCTCTCTTCCTCCTCAAGCTTCTCCCGACTGCCCCTACGTTTTATTCAC
TAGTCCTTCACTTCGGCCCCCGCTCCAATACCACCGTACTGTGGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_m02.g1 MSMg01no053_m02.g1 CHROMAT_FILE:
MSMg01no053_m02.g1 PHD_FILE: MSMg01no053_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:45 2005
         (264 letters)



>mm_chr7_137821818_137822482
          Length = 665

 Score =  453 bits (234), Expect = e-132
 Identities = 255/262 (97%), Gaps = 1/262 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gggtggggcgctggcagaggggctgagtgtgaggccacacggtggttcccacacagctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggtggggcgctggcagaggggctgagtgtgaggccacacggtggttcccacacagctcc 406

                                                                       
Query: 64  agtctcggcttaggaaagaagcaaaaaccctgtcctcctcttgccctggaaaagctctgg 123
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 405 agtctcggcttaggagagaagcaaaagccctgtcctcctcttgccctggaaaagctctgg 346

                                                                       
Query: 124 agtctt-gccagccttggtagagggatggaagctatttggaccacatgggaacagcttat 182
           |||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 345 agtcttggcgagcctcggtagagggatggaagctatttggaccacatgggaacagtttat 286

                                                                       
Query: 183 cagaaagcttggcaagcccacaggctgtggttcagggcagcatttcccatagtgcactgc 242
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagaaagcttggcaagtccacaggctgtggttcagggcagcatttcccatagtgcactgc 226

                                 
Query: 243 tctctgggccccctgcattgac 264
           ||||||||||||||||||||||
Sbjct: 225 tctctgggccccctgcattgac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space:   167280
Effective search space used:   167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)