BAC Information

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BAC

Clone NameMSMg01-054H02
Chromosome7 (Build37)
Map Location 4,876,055 - 4,876,389
singlet/doubletsinglet
Overlap geneNat14
Upstream geneLOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628
Downstream geneA430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054H02.T7 (MSMg01no054_h02.b1)MSMg01-054H02.TJ (MSMg01no054_h02.g1)
ACCAG282377AG282378
length819708
length of high quality
(start - end)
334 (131 - 464)198 (118 - 315)
definitionCHROMAT_FILE: MSMg01no054_h02.b1 PHD_FILE: MSMg01no054_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:38 2005CHROMAT_FILE: MSMg01no054_h02.g1 PHD_FILE: MSMg01no054_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCTAGCCCCCCCCCCCCNTTTATAACCAGCCTTTTCTCTTTTCCCCC
ACCCGCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAG
GATCCGCGGAATTCAGCAAATACCTGTGATTAGAGACCATGCCCACTGGA
TAGATGGGCAGAGAACCAGCACCTATAGACCACCTACTGTGTGCCAGGCA
CTTTACATCCCCCCCTCAGTGTCTACCTAGTCTGCTGGGCTGATAGTGAA
GCACCGAGGTTGATGGACTTACATGCCCAGTGTGCCTGCCAGCTGCAATG
AGGACTCTAAACTCAAGTAGAACAAATCCCTTCGTGGTGTTCTGGGACCA
CTAGAGGTCACCGGTCCACTCCTTTGCCTCACCCCCACCGCCCCAGGCTG
TATGCACTGAAAAACGTCGGGTTCTGGGTCTACAAAGCCCCTGCTGCCTG
TGTTTGAGGTCTGGGAGGGAGATCTGAGGAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGACAGAGATATATTTCTCTTTCTGCTCCGC
CCCACACTTCATTATTTAATATTATATTATTAAAATATCTTTCTCCCCGT
CATTTTACTCAACAACCCCCCACTTTCGCGTCCTTATCCTACCCCCTTTT
CTTTCCTCCTCTTTTTTTTCTTTCTCTTTCTTTATTATATTTATTATATA
TTACCCCTACCCATCTTAACCCTCCCCTCCCTCTTCCCACGTGTTTATTC
TCTGTCAATATTTATTTTTATAAACTAACCATTTAACGACCTATAAGGAC
TTATATATATTGTGTCCCC
CAATGCAGTGGGAGGCCAGGAGGCGCCGGATCCAACGTGAAGGNGAACNA
NAGAATTTCAGCAGGAGGCCNCNGNAGAGAGGCTGGCCTCAAACAGACAA
AGGTTTTATCCCCGGCATGCATCACCACCAGACTAGACATCCTCTTCTGA
CCTCCTCGGACACCAGGCATGCACATGGTACATAGGCATGCAGGCAAAAC
ACTCCTACACACACAATAAAGTGAATAAATACTGCTAAAAATGTAAAATA
ATGGCCCAACAGAAAAGTTATGACTTGTATAGTGAGTATCCATATATGCA
CTCATTTTTTTTTTTTCCGAGCGAAACCAAAGCCCGGCACAAACCCACGC
CCCCGCCCCCCGACAAGGGCCCACAGCGCAGCCCAGGCTGACCAGGAACA
CACCCCGCAGACCAGGAAGGACAACAANCCCCACAACCCCCAGACCCCGC
CCCCCAAGCGCAGCGCACAAAGGAACGCGCCAACAACAACCCCAAGAAAC
AACCACAGCCCAACACACGAAAAGAGCAAACGAAACAAGGGAAAGGAGCC
CCCACGGACCCAAGAGACAGAACCCCCCCTTACTGCCATCACTTCTCTAC
TTCTGATTTTGTTTTCTCCAACTCCTGTTCTCCTCTCCGCGCGCGCACAT
TGTTTTTTGCCCCCCCCAGCACGCTCAACAACGCACCCACCTTCTCCCTC
CCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_h02.b1 MSMg01no054_h02.b1 CHROMAT_FILE:
MSMg01no054_h02.b1 PHD_FILE: MSMg01no054_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:38 2005
         (334 letters)



>mm_chr7_4875855_4876589
          Length = 735

 Score =  578 bits (299), Expect = e-169
 Identities = 326/335 (97%), Gaps = 1/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagaccatgcccactggatagatgggcagagaaccagcacctatagaccacctactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 201 tagagaccatgcccactggatagatgggcagagaaccagcacctaaagaacacctactgt 260

                                                                       
Query: 61  gtgccaggcactttacatccccccctcagtgtctacctagtctgctgggctgatagtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccaggcactttacatccccccctcagtgtctacctagtctgctgggctgatagtgaa 320

                                                                       
Query: 121 gcaccgaggttgatggacttacatgcccagtgtgcctgccagctgcaatgaggactctaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaccgaggttgatggacttacattcccagtgtgcctgccagctgcaatgaggactctaa 380

                                                                       
Query: 181 actcaagtagaacaaatcccttcgtggtgttctgggaccactagaggtcaccg-gtccac 239
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| 
Sbjct: 381 actcaagtagaacaaatcccttcttggtcttctgggaccactagaggtcaccgtgtccag 440

                                                                       
Query: 240 tcctttgcctcacccccaccgccccaggctgtatgcactgaaaaacgtcgggttctgggt 299
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tcctttgcctcacccccactgccccagtctgtatgcactgaaaaacgtcgggttctgggt 500

                                              
Query: 300 ctacaaagcccctgctgcctgtgtttgaggtctgg 334
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacaaagcccctgctgcctgtgtttgaggtctgg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space:   235950
Effective search space used:   235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)