BAC Information

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BAC

Clone NameMSMg01-055B08
Chromosome7 (Build37)
Map Location 101,803,630 - 101,803,923
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638305, EG545982
Downstream geneEG666816, LOC100040132, LOC666823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055B08.T7 (MSMg01no055_b08.b1)MSMg01-055B08.TJ (MSMg01no055_b08.g1)
ACCAG282848AG282849
length7041,686
length of high quality
(start - end)
297 (63 - 359)---
definitionCHROMAT_FILE: MSMg01no055_b08.b1 PHD_FILE: MSMg01no055_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:24 2005CHROMAT_FILE: MSMg01no055_b08.g1 PHD_FILE: MSMg01no055_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
GCAGCAGATCCTATGGCCCAGATTAGTAACACACCAGATTGAAGGTATGT
CTAGATCAAGGCAAGATCTAGATCAAGGATGTGTGTCTTCATATTCTAAA
GGTTCAGATTAGAATTAGATTTACTCACTTCAAACCTATCATAGGTGCAC
TCTCAATTTCTATATTGCAGTTCATTCTATATCTTCTCAAGTTGACAACC
AATGATATATACTTGGAAGAAACCCTTGTGTCTTACTGTCATCCCTCTGG
GAGACTAGTTCTTCTCCCATTTCTAACTTCTTTAAAATGTACTTTTCTTT
CTATTATATGTCCTCTTGCTTTATTCCAAACAACTGATTTTTAGTGTATG
TAAAAAATATTTAATTTATGTTTACATCAGATTTTATTGAGAATATACCA
TGAACTTGACATTTTGCTACATTCTAAGTCTATGAAAATGTCCATGTAAG
TTATATAAACTATAGGAACAGAGAGGGATATATTCTATATATAAACAATT
AAAATAGTAATATAAATGAGCCCCAGTTGGCAGAAAGTCATCACTTTTAT
TTGTGGCTTATCAATTAAAGGCAACAAAAGGGACATATGACTGCTTATTG
TGATAACAGAGATTACACTGCCAGGCCAAGTGAACTTATTCAAAAAGACA
CTGG
TGCACCATAAACACCTCATCTGGGCGTGATCGTGTGATCGCACATATAAC
ATAATCGCGCTCGCCGCGCCCAATCGAACGCACGTACATATGGCGCCTAT
GTTATATAATTCACTAGTACAACACGAGTCAGCAAGGGGGCGCGCGGCGG
GTATATTATGATTCCGCCCGTCCTCTCACCACCGCAATGTGCGAGGAAGA
AAGAGTATCGACGAGTGCTACGGCGTGTTCCGGCTGCACAACGGTGACAT
ACATTATGCGGCGAGGTTGAGTACCGAGTTGAGCGAGACAGAGACGTGAT
GGCGCGGACGGCGTATATGAGCACATCAAGCACGATACTGTACGCAGCAT
ATAACTACTACTTAACATAGAACACCCAGACGCATATACTTCGTAACGAC
AGGACTGAGACGCGTACGACTGATTGTTCGCGTATGCAGATGCTGTTTGC
GCTCGCGAATATTTCGACGAAACGCACCCGCAGACTGACCGCTATGTCGC
TGTAGATCGTAAGTCGCGCGCTATGACGCTCTCGTATATCCAGTATTCAC
CACACTCACCAATTATTTATTTCGCGGCGCAATATATTTTACCACGGAGC
GCACGATCTTCGCCGAGGCGATCAACGAAGACAGAATACTGCGTTCGGCA
TTGGCGAACACGGGCGACTCATTTAGTGTATCCGCGCGCGCGATGAGCAC
TCATTATCGCGCGCAACAGACACGAACCTCGCTCGTAGCGGCGCACCGCC
GGATGTGACGGGCGGTGATTATAGACGGACATAGCATAAGCGCGCACAAC
GATCGCCCTCGACATTCAGACATTCTTATCATCTATACGCCGCCGGTGAG
CCGATTACGCGCGCTATATTCTTATATACGTCCGCCGTAATTAGTTGCGC
CGCTGATCGATAGACGAGATGAAGACATAGGAGCGTAACGCCACGACGAC
ATAGAGATGCCTCCGCCGTACACTATCGATAGTAAACCGCAAGCCGCCGC
TACGCGCGGCGCCGTCCGCGTATATATCTCACACACATAATAACTCAATG
CGCACGTACGGACACGCGTCGAGAGTACACTACGCGCACGCCCGTCGCAC
CGCCGTCCGTATTAATAAGCATCGCGATCCGCGGAGACGACGTTATTTCT
GTTGCGCCGTACCTCTCTATACACGCGCCACGCGTCAGCCGCATACGATC
CGCATTTATTACTTCTNTCCGCCACCCTCTCGATTATGTGAGTGGTATAC
GCGAGCGCGCGCACGTCGCTTCATACNGTCGCTNATTATATTATCGACGC
GGCACAGACGCGNCGCCACGATANCTAGCACGATCTTATTGTACGACGCC
CGCGCCATATAATATATATTGTGTATATACGCGCGCGCGCGAGCGCGCGC
ACCNCGCTGTATTCGTATACCTCATGGTGCTGACGACAACGCTCGTTCAC
GACGCGCCGACGGATATACGAGGGACGCGTGACTATTGACATGCCGAGCA
TAATCGGCGGCGAGAGTAGTACAAGCGCGGCGCGACGATATAGATATATC
GCCGCGCACGCGCGTGCGCCGAAACGTAATTTTANCCGGGACAGTCGAGA
CGCGCCGCAGAGGCATATCACGCGATATACGCGTCGTACCGACGCCGTNA
TAGTATCGATATACTATCGTCGCGCCCTCACTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_b08.b1 MSMg01no055_b08.b1 CHROMAT_FILE:
MSMg01no055_b08.b1 PHD_FILE: MSMg01no055_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:24 2005
         (297 letters)



>mm_chr7_101803429_101804125
          Length = 697

 Score =  497 bits (257), Expect = e-145
 Identities = 286/299 (95%), Gaps = 9/299 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcccagattagtaacacaccagattgaaggtatgtctagatc--a--aggcaagatc 56
           ||||||||||||||| ||||||||||||||||||||||||   ||  |  |  |||||||
Sbjct: 202 atggcccagattagtgacacaccagattgaaggtatgtct---tcccacca--caagatc 256

                                                                       
Query: 57  tagatcaaggatgtgtgtcttcatattctaaaggttcagattagaattagatttactcac 116
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 257 tagatcaaggatgtgtgtcttcatactctaaaggttcagattagaattagatttactcac 316

                                                                       
Query: 117 ttcaaacctatcataggtgcactctcaatttctatattgcagttcattctatatcttctc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcaaacctatcataggtgcactctcaatttctatattgcagttcattctatatcttctc 376

                                                                       
Query: 177 aagttgacaaccaatgatatatacttggaagaaacccttgtgtcttactgtcatccctct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aagttgacaaccaatgatatatacttggaagaaacccttgtgtcttactgtcatccctct 436

                                                                      
Query: 237 gggagactagttcttctcccatttctaacttctttaaaatgtacttttctttctattat 295
           ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gggagactagttcttttctcatttctaacttctttaaaatgtacttttctttctattat 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)