BAC Information

Click to search

BAC

Clone NameMSMg01-055L14
Chromosome7 (Build37)
Map Location 103,221,263 - 103,221,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666823, Frda-ps
Downstream geneEG666836, Odz4, LOC670727, LOC666858, Nars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055L14.T7 (MSMg01no055_l14.b1)MSMg01-055L14.TJ (MSMg01no055_l14.g1)
ACCAG283316AG283317
length7021,405
length of high quality
(start - end)		661 (42 - 702)---
definitionCHROMAT_FILE: MSMg01no055_l14.b1 PHD_FILE: MSMg01no055_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:12 2005CHROMAT_FILE: MSMg01no055_l14.g1 PHD_FILE: MSMg01no055_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATATCTCCTCTCTATTCCTGCTACTCTTGCACGATTCTGAAGGTTCTG
AAGGCAGGAGTGAATGTGGAAAGTGCTTTCCTTCAGAAGACTCCACAGGT
AGCAGCTCTCTGTCTAGCCCTCTGCTGGCTGGCTGTTTCCCTCTGCCTGG
TTCTCAGGGTTCACCCCAGGCTCTTTCCTTTCCTCTGGTTGAATTTCACT
TTGAAATTAGACAAAAGGATTTTCTAGGCTATCTTGCAAAGCTTGAGTTA
GTTTCCTTTAGTTTTATCAAGAAACTAGAAGAGGCAACAATACTTTATCA
TATGCATCTGGCTGAAGTTCTCAAGAGTACCCTTCTTCAGCAGCATAACA
AAACCAAAGAGTACCAAGGATTTTGACAGCAACATATTTTTCTGACGGTA
TGAACAATCAAGCGGTTGAACTTACTCTTTTTTCATTTCTTGGGCAAGTT
TTTCTAGGCTGGCCTTCAATTCACAATCCTTTTGCTTCAGCTCCCTGCCG
TAGCTAGAGCGACAGGCATGTAACATTGAGGCTTTCAATCGGTGATTCTC
AATTTTCCTAAAGCTGCAACTCTGTAGTAATACTACTATATATAATATAG
AAATATCTTAATTTAAGAAAGTATCTCATACATTCGTTTTATGTTTTGAT
CA

GAGCAATCGCGTATAGAGGATGGATCAGCGATATAAATATCCCGCTGACA
CCGCGTCGGAGTGATGGACCGTGAATAAAATGAGAGAAAACGAGGGAAGG
GAGGGGGGGTAATATTTAAGACGATAGCAGCATCGATTTGCGTAGAAAGG
TGATGGCGGTACGAGAGGTAGTAGGTAGAGGGTGGATTATAAGGACGGAA
ATTACGAGTAAGGATTATAGATATTAGAGGGTATGATAGTTACGTTAATC
GGTGAAGTAGCAGATTTATAGACCTTATTGCGAGCGGGAGAGATATTTAC
TACGAGGACCAGTTCGCTGGAGGATGTTTCGATTATGCACGTGAGACAGT
GCGGTATTTCGACGACGCTAGAGTAGTGGGAGGAAGACGTAATATCAATG
ACGGCGGCATAAACGCTTCGTATAAGTTTTCGGGAGCGGCGAAGTTTATT
TCGCGGCGAATTTAAATGCGCGCGAGGTAGTATTACGGGTACGTAATCAT
AATAGAGATTTGTAGCGCTAGTGTTACGGGGCCTGATTGATGGTTGGTCG
CCGCGGGAGGGTCTAGGCAGCCGTATAGAGGATAAGTCCGGTATGCGTCG
GACGGGTATGTTGTAGACAGATTATGCGCGATGATGTGGACACAAACGAA
GAGCGAGGGCGACATGTCACTTCGAACATTAATACCCGGCGGTTAGGGAT
GACGCCCGAATCATAGTATTAGGTACGGCAGAAATATGAGTGCTCTAGAT
ATGGGTGATCATAGACGAGTGTTCGCGGATTAGGGAGAGTATAATCGCGA
AACAATGTGATATTAGAAGAGACCCGGTCGCGCGGGCGTTCCGATAGTTA
TACAGCACATAAAAGTGATATTCGGGTCGGTACTCATTGGTTTGACAATG
AATCCGGCTTAGGCGCGTGGTATTATATTCATCGCGTACGGATCCTACGA
GCTAGATGTGGGATAGAGATATAGAGGCGAGACGCGACGTCGGAATGATT
CCGTTTTCTCATTTATGCGCCGCTCGTGATTTTATAGTTTTCGGCTAATG
CCGATCTAATNGTTCGGGCGCTGAATAATATCGACCGACAATAGGCGAAC
GGAGGAAGATGAGATCGATTTTATGCGCGGGCGATAATATATATTGTGAG
TTTACCGCGCGCACGCGCGCGCGGCCCGATATCAATAGCACTAGATAGTA
GGACGTTATAAGCGCGCGCGTGGATTACGGGGGCGGCGGATANACTATCG
TCTAAACGACGACGAATAATGCGACGCGCGGACGTATAATAATACGCAGC
GCGCCGTCGCGGACTGATATATGTGCGCGTGTCGCACGCCGCAATAAGTA
TTGGTATATGACGATCGTGCGCGCGTATTTATATATATGACCATCGCAGC
GCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_l14.b1 MSMg01no055_l14.b1 CHROMAT_FILE:
MSMg01no055_l14.b1 PHD_FILE: MSMg01no055_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:12 2005
         (661 letters)



>mm_chr7_103221258_103222318
          Length = 1061

 Score = 1232 bits (637), Expect = 0.0
 Identities = 652/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatatctcctctctattcctgctactcttgcacgattctgaaggttctgaaggc 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 662 gaattcaatatcacatctctattcctgctactcttgcacgattctgaaggttccgaaggc 603

                                                                       
Query: 65  aggagtgaatgtggaaagtgctttccttcagaagactccacaggtagcagctctctgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aggagtgaatgtggaaagtgctttccttcagaagactccacaggtagcagctctctgtct 543

                                                                       
Query: 125 agccctctgctggctggctgtttccctctgcctggttctcagggttcaccccaggctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agccctctgctggctggctgtttccctctgcctggttctcagggttcaccccaggctctt 483

                                                                       
Query: 185 tcctttcctctggttgaatttcactttgaaattagacaaaaggattttctaggctatctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcctttcctctggttgaatttcactttgaaattagacaaaaggattttctaggctatctt 423

                                                                       
Query: 245 gcaaagcttgagttagtttcctttagttttatcaagaaactagaagaggcaacaatactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 422 gcaaagcttgagttagtttcctttagttttatcaagaaactagaagaggcatcaatactt 363

                                                                       
Query: 305 tatcatatgcatctggctgaagttctcaagagtacccttcttcagcagcataacaaaacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tatcatatgcatctggctgaagttctcaagagtacccttcttcagcagcataacaaaacc 303

                                                                       
Query: 365 aaagagtaccaaggattttgacagcaacatatttttctgacggtatgaacaatcaagcgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaagagtaccaaggattttgacagcaacatatttttctgacggtatgaacaatcaagcgg 243

                                                                       
Query: 425 ttgaacttactcttttttcatttcttgggcaagtttttctaggctggccttcaattcaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgaacttactcttttttcatttcttgggcaagtttttctaggctggccttcaattcaca 183

                                                                       
Query: 485 atccttttgcttcagctccctgccgtagctagagcgacaggcatgtaacattgaggcttt 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 182 atccttttgcttcagctccctgccatagctagagcgacaggcatgtaacattgaggcttt 123

                                                                       
Query: 545 caatcggtgattctcaattttcctaaagctgcaactctgtagtaatactactatatataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 caatcggtgattctcaattttcctaaagctgcaactctgtagtaatactactatatataa 63

                                                                    
Query: 605 tatagaaatatcttaatttaagaaagtatctcatacattcgttttatgttttgatca 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  tatagaaatatcttaatttaagaaagtatctcatacattcgttttatgttttgatca 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |