BAC Information

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BAC

Clone NameMSMg01-057L12
Chromosome7 (Build37)
Map Location 101,123,788 - 101,272,147
singlet/doubletdoublet
Overlap genenone
Upstream geneA830059I20Rik, LOC100040298, LOC666783, EG638305
Downstream geneEG545982, EG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057L12.T7 (MSMg01no057_l12.b1)MSMg01-057L12.TJ (MSMg01no057_l12.g1)
ACCAG284807AG284808
length776718
length of high quality
(start - end)
220 (131 - 350)254 (74 - 327)
definitionCHROMAT_FILE: MSMg01no057_l12.b1 PHD_FILE: MSMg01no057_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:45 2005CHROMAT_FILE: MSMg01no057_l12.g1 PHD_FILE: MSMg01no057_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,271,929 - 101,272,147)(101,123,788 - 101,124,040)
sequence
NTTTTTTTTTTTNNNNNNNNNTTTTTTTTCCCCCCTCTCCCCATCTATCC
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCTCTTTCTATTCTTAGAAAAAAATAACACCCAAAAGATATTAG
TAGTATCACTCAGAGTCTATGAGAACAAGTGGTTTGATTGTGAGATAAGG
TTAGGTACGATGCCATCTAGTGGGCCATTGCTCATAATTAAAATTCATTT
AGTCAAGATAAGCTTCAGTGTGTTTCTAGATGCTCTCCCCTGATTCACCT
ACCCTCTAGTGAATGGCTGTGAGTACAGGGACATCTGTGTCTTGATAGGT
AAGGATTCAGAGTCTCACAATAATTAGTATGATATAAAAAGGAAATACTA
ATTGAGAGAGGGGCATACACAAATACTGGAATAATAACTAAATCTAATAT
TATAGACACTGTAATACCTGGACCACCCATTAACTATAAGGCCACATCAA
GTTGTTTGAGGATGCTGATGTGATCAAGTCACCATATCCTGTAAAACCCA
TATACCGGATGTCTAATTATCTTTGAATCCCGCTAAAGTGATGGTTAATG
GTTCACAGCTCTTGGTTGTCCTTTTCAGGACTTGCATTAAGTTCACCACA
CAGAATGACTTATAATCGCCCATCAATCTCAGTTACAGGTTAACTTACAC
CTTCTTTCTGATGTCTGTGTGTAATACATTCCTGTGAGGCTTTCATTTTT
TTTTGGCAGTCTCACATCCTATTCCC
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAGAACTTGTTAATGGAAAGAAGT
TGGGTTTTCTGATATTTCTATAAACACCAAATAAAGTAAAATCAAAAGAA
AATAAGCCTGAACTTACTGCAACTTGCACTAGCTCTGTAGAATGAACTAC
AAAGAAATAAGGACAAGACCAGATATTGGGAGAAAATAATTATAAAAAAT
ATCTGTTCAAGGATTTGTACACAAATATATACAGTACTCCTAAAAGTCAA
CAGTCATAAAAGAAATTTTAATGGACTCATGAGCTGAGTATAGAGTTAGA
TAAGGAATATACAGGTTCTAGATGATCCACATCCCACTATTACATATATG
CGTATGTGCGTAAACATATGACCACCCACTAATCAATTTTACCATAAAAT
AGACATGCCATTCCATTTTTTTTCTCTTTCTTCACCTTCTCCTCTACTAG
GCATCTCCTTCGTCTACATTTTCAATGTTATCCCCATGGTCCCCTACACC
CACCCTCCTATACTCTATCCTCCCCTTCCTATTTTTTGTCCCTCTCGTCC
CTCTGTATCCGGCTACTTCACGCTGCTCTGTTTCATGGTCTTCTCTTTGC
TCTGATGCTCATTCACGTCATCCTCTTCAGTACATTGCTTCTACACTCTT
ACTCTTCCGTGTTCTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_l12.b1 MSMg01no057_l12.b1 CHROMAT_FILE:
MSMg01no057_l12.b1 PHD_FILE: MSMg01no057_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:45 2005
         (220 letters)



>mm_chr7_101271729_101272348
          Length = 620

 Score =  408 bits (211), Expect = e-118
 Identities = 217/219 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacacccaaaagatattagtagtatcactcagagtctatgagaacaagtggtttgattg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 419 taacacccaaaagatattagtagtatcactcagagtcaatgagaacaagtggtttgattg 360

                                                                       
Query: 61  tgagataaggttaggtacgatgccatctagtgggccattgctcataattaaaattcattt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgagataaggttaggcacgatgccatctagtgggccattgctcataattaaaattcattt 300

                                                                       
Query: 121 agtcaagataagcttcagtgtgtttctagatgctctcccctgattcacctaccctctagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agtcaagataagcttcagtgtgtttctagatgctctcccctgattcacctaccctctagt 240

                                                  
Query: 181 gaatggctgtgagtacagggacatctgtgtcttgatagg 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gaatggctgtgagtacagggacatctgtgtcttgatagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no057_l12.g1 MSMg01no057_l12.g1 CHROMAT_FILE:
MSMg01no057_l12.g1 PHD_FILE: MSMg01no057_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:45 2005
         (254 letters)



>mm_chr7_101123588_101124241
          Length = 654

 Score =  489 bits (253), Expect = e-143
 Identities = 253/253 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataagaacttgttaatggaaagaagttgggttttctgatatttctataaacaccaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagaacttgttaatggaaagaagttgggttttctgatatttctataaacaccaaata 260

                                                                       
Query: 61  aagtaaaatcaaaagaaaataagcctgaacttactgcaacttgcactagctctgtagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtaaaatcaaaagaaaataagcctgaacttactgcaacttgcactagctctgtagaat 320

                                                                       
Query: 121 gaactacaaagaaataaggacaagaccagatattgggagaaaataattataaaaaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactacaaagaaataaggacaagaccagatattgggagaaaataattataaaaaatatc 380

                                                                       
Query: 181 tgttcaaggatttgtacacaaatatatacagtactcctaaaagtcaacagtcataaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcaaggatttgtacacaaatatatacagtactcctaaaagtcaacagtcataaaaga 440

                        
Query: 241 aattttaatggac 253
           |||||||||||||
Sbjct: 441 aattttaatggac 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)