BAC Information

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BAC

Clone NameMSMg01-058F12
Chromosome7 (Build37)
Map Location 14,435,609 - 14,435,796
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627
Downstream geneEG434121, EG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F12.T7 (MSMg01no058_f12.b1)MSMg01-058F12.TJ (MSMg01no058_f12.g1)
ACCAG285281AG285282
length701696
length of high quality
(start - end)
190 (118 - 307)252 (64 - 315)
definitionCHROMAT_FILE: MSMg01no058_f12.b1 PHD_FILE: MSMg01no058_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:34 2005CHROMAT_FILE: MSMg01no058_f12.g1 PHD_FILE: MSMg01no058_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TTTGCGGCGCTAAACGACTCACTATTCGTACGAGGCGCGGAATCCCTGGA
TTACTAAAACAGATTGNTGNGAGNGGCATATGGGAGAAAAAATGGAACCT
GGATCCTCTCCAAGAACATTGCTTTTAGACACTGAGCCATATCATGCCTC
TCTTATTTCAGGGTCTGTTTGTAAAATGAAAAATCTTGTCCAATAAGATA
TGCTTATGCCTTGAATTCTATGAAATACAGGTTTCCAATGGTGTAATCTC
TTGTTTTTTCTGCTATCATAATCAGACCTGGTAGTTCAGAAGATACAAAT
TTGTTTTTATTGTTTTCAAAATGATGCTCTATTTTCATCTGATTTATTCT
GTACCGTTCCCGCCCATTATTTTCTCCAAAATGACATCTGGTGGACTATG
AATATAATGGGCCTAGACTAATTTTTATCCACACAAAAAAATACCTTAGA
TATTGCGGACTGTTGATTCCTAAAATTAATACTGAAGATATTTTGCCCAG
GTATATGGAAACTTTATACACTAGAAGCTTCCTAAAAGTAAATTATTATT
ATTTAATTGACCGATTGACACATGCTGTCTGACAATGCCCCACTTTGAAT
TTATACACTACCTACCCCAAACCCCATTCGCATAAAATGAAACAACCTTG
TTGTATTGTTCGTATAAACAGTTCTAATACGACCCCCTAATCCTAATTAT
T
ATGTGCGAGGCCTGGCGAACGCCTGGTCCACAAATTGAGGTGAACTATAG
AATTTCCCCGAAATTCCAAGACCAGGGTCAGTTCAAGTACTGCCTAGGAC
ATTGGTGAAGGCCAGAAAGCAAAGGTCAATTTTGCTTATCTATTTGACAA
GTCATTAATAAATATAACAAAATATAAACATATAATAAAACAATATAATG
AAACAATATATAATATATAAAAATAATAAAACAATACTGGGGAACAAAAG
GCACAGAGGTCAATTCACTGTATAATGCAAGGACAAGTTTGGAGCATTCA
TACTATGGGATGCCTATGCTTCACAAGTCTAAGTTTACATGAAACTTTTT
GCCTCAGGACTTCATCCAAGCTTTTGGGCCTGCCACTCAGTTTTTACTGG
AGTGGGTGTGGCAATGAAGTGATGTTGTAATATGTCAAATGCTTTTTAAG
CTCCTAAGGAGATGATCATATGATTTTTTAAATTTCAGTTCGGTTATAAT
GGATTTTCATATATTAAACTAACCTTGCATCCCTAGGATGATTCTGTCTT
GATGGTTGCGGCGAATTCATTAACGGTGAATGATGATTTTGACGCGTTCT
TGCCACCAGCTTGCAAGACCTTTACTGACGAATTTTGTATACATATTCAC
AAGAGACACTGGTCTGAACTTCTCATTTATGGTAGCCCTCTTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f12.b1 MSMg01no058_f12.b1 CHROMAT_FILE:
MSMg01no058_f12.b1 PHD_FILE: MSMg01no058_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:34 2005
         (190 letters)



>mm_chr7_14435409_14435998
          Length = 590

 Score =  310 bits (160), Expect = 5e-89
 Identities = 181/188 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcttttagacactgagccatatcatgcctctcttatttcagggtctgtttgtaaaat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attgcttttaaacactgagccatatcatgcctctcttatttcagggtctgtttgtaaaat 329

                                                                       
Query: 61  gaaaaatcttgtccaataagatatgcttatgccttgaattctatgaaatacaggtttcca 120
           |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaaaatcttgtccagcaagagatgcttatgccttgaattctatgaaatacaggtttcca 269

                                                                       
Query: 121 atggtgtaatctcttgttttttctgctatcataatcagacctggtagttcagaagataca 180
           ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 atggtctaatctcttggtttttctgctatcataatcagacctggtagttcagaagagaca 209

                   
Query: 181 aatttgtt 188
           ||||||||
Sbjct: 208 aatttgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)