GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAAGATTTTCGAGAGAGTTAGAAGAACTTGGAGAAATCCAAAGG
CAGTCTCACCTTTGTCAGATTGATCCAGGCCCCAGAGACGTACCTCTGAC
CACATTGTGAAATCTCTTCCTCCACCTACACCTACAGAAAAGCCATTGAT
ACTGCTAGTTCTGTGAAGACTGCCTAGGCCCATGGGCTGGACCTTACTCT
GAAATGATAGCATTTGAATCCAAGGATTCAAGTTTCCAAATACTTGATTT
TCTAATCATACCCATATGTTTTATATGTATTGTACTTGAAGGTATTACTA
AGTGTAGAAGTAACAGTAAGCAATCTTAGGAAGTATTGCGACTGGCAATA
TTCAAATCTTTAAGCTCTTTGCAAGGCATCCTTCTCACAGATCTTGCCAA
TAATCCCACCACTTACTAAGCATTGCTGAGGTGACCCTATGGATAGGCAA
ATAGGTAGGTGAAGGAGAGAGGGGAAGGGAGGTAGAAAGCACCTCTCCTT
TCTCTATCGCCACCTTTTATCTTTAAACACTAACCCATCGATCTTCACTG
TCCCAGCCCATCTACATACACCCATCATTATTCCTTAATGGTATAACATT
CACCACCATCAAATATTTAATTATTTGACCCACTTACACCCTGTTCGTAT
AAAATCCTATTAAACCTCCCTCCTTTTCCCCTACTTCCCGTTTTTTN

NTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGCCTCAATTGGCAAAGGAACAGTTT
GGAGTGTTAGTTCAATCTTTTCACCAGTACTACGATCCCTGGAAACAGCT
GGACGAAGACGCCCGTGACTGTGGGAGCCTCTTTGTAGACTCCACTTTCG
TTATGCTCAACCACCTTTCTCATGTTGTCTCCCAGGTCCAGCTGGCATAA
GCGTGGGCTCAGGCTAGGCAAACAGTGTCTTTGCTGTGCTTTGATTTGAT
GTGCTTAGAGTTGATGTGTTTACGTTGCCATTCCTTAGGACGCCCTCCGC
AATCATTTCAGGCCTTTCCGGGCTTTGATCGACCCGACCGCGCGCAGTGT
CAACGTTCTGGTACAACCCCCGCAGATTTAAGAGCCTGTTGAGTCCATTC
GTATTTATGGTCACATTGCGTATTTTTATCTTGTTGCAGCCACATATCCT
TCGCTGCCCCGCCGCTAACTCCTGCCCGAATTGTACACGGTTTGCACCCT
TCCGCTCCCCTTTATCCCGCCCCAGCTTCTCCGGTATTTATTAGTTCTCA
GCCCCAGCAGCTCGCTCCATCCAATATTTTCCGTATAAAAATTATAGATT
TTTTCTACTCCCTTGAACATCCCACCATCCCCCCCTTACTTACTTTCGCA
TATATGTTTCTAGCCATACGTGAATATCGCCTCGGCCCCCAGTCCGCCCC
ACCGTATTTN

Query= MSMg01no059_m09.b1 MSMg01no059_m09.b1 CHROMAT_FILE:
MSMg01no059_m09.b1 PHD_FILE: MSMg01no059_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:21 2005
         (471 letters)



>mm_chr7_77388978_77389848
          Length = 871

 Score =  768 bits (397), Expect = 0.0
 Identities = 449/471 (95%), Gaps = 11/471 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagattt-tcgagagagttagaagaacttggagaaatc--caaaggcagtct 60
           ||||||||||||||  || ||||||||||||||||||       ||  ||||||||||||
Sbjct: 209 ggaattcaaagattcctc-agagagttagaagaactt-------tctccaaaggcagtct 260

                                                                       
Query: 61  cacctttgtcagattgatccaggccccagagacgtacctctgaccacattgtgaaatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctttgtcagattgatccaggccccagagacgtacctctgaccacattgtgaaatctc 320

                                                                       
Query: 121 ttcctccacctacacctacagaaaagccattgatactgctagttctgtgaagactgccta 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttcctccacctacacctacagaaaagccattgatactgccagttctgtgaagactgccta 380

                                                                       
Query: 181 ggcccatgggctggaccttactctgaaatgatagcatttgaatccaaggattcaagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcccatgggctggaccttactctgaaatgatagcatttgaatccaaggattcaagtttc 440

                                                                       
Query: 241 caaatacttgattttctaatcatacccatatgttttatatgtattgtacttgaaggtatt 300
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 441 caaatacttgattttctaatcatacccatatggcgtatatgtattgtacttgaaggtatt 500

                                                                       
Query: 301 actaagtgtagaagtaacagtaagcaatcttaggaagtattgcgactggcaatattcaaa 360
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttagtgtagaagtaacagtaagcaatcttaggaagtattgcgactggcaatattcaaa 560

                                                                       
Query: 361 tctttaagctctttgcaaggcatccttctcacagatcttgccaataatcccaccacttac 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 tctttaagctctttgcaaggcatccttctcacagatcttgccaatcatcccaccacttac 620

                                                              
Query: 421 taagcattgctgaggtgaccctatggataggcaaataggtaggtgaaggag 471
           |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 621 taagcattgctgagatgaccctatggataagcgaataggtaggtgaaggag 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)