BAC Information

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BAC

Clone NameMSMg01-059P08
Chromosome7 (Build37)
Map Location 38,073,652 - 38,196,349
singlet/doubletdoublet
Overlap genenone
Upstream geneTshz3, LOC100043874
Downstream geneZfp536, LOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P08.T7 (MSMg01no059_p08.b1)MSMg01-059P08.TJ (MSMg01no059_p08.g1)
ACCAG286515AG286516
length699695
length of high quality
(start - end)
470 (50 - 519)457 (71 - 527)
definitionCHROMAT_FILE: MSMg01no059_p08.b1 PHD_FILE: MSMg01no059_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005CHROMAT_FILE: MSMg01no059_p08.g1 PHD_FILE: MSMg01no059_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,196,012 - 38,196,349)(38,073,652 - 38,074,108)
sequence
NTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAGAGGCG
CGGAATTCACTCTACTATCCGATTTTTCTTACATTAAAATATCTTTTTAT
TTAAAGAATTAACCCTACTTGATTAAGGTATTTTATTCAGTAGTGAAGAT
TGAACCTTGGGCCTCCTACTTGTTAGGAAAATGCTCTGCAAGAGCCAAGT
GCCCAGCACACCACAGGGAAATTCTAGGCAAGCTCCTACTGAGCCACACC
CCCAGCCCCTCACTGGGGGATTCTAGGCAGGGGCTCTACCACTGAGCCAC
ACCCCCAGTCCCTCACTGGGGAATTCTAGGCAGGGGCTCTACTACTGAGT
CACACCCCAGTCCCTCTCTGGGGGGTTCTAGTTCCATGTCCTTTTTTCTT
TAAATTTGGAGACAGAACCAATGGATACATTGCCCCAATCTGACTTTGAA
CTCAGGCTATAGCCCAAACAGTCCTGAAATGTATGGCCATCCTACCTCAG
CTTCTCACTACTTGGACCTGGACCACTAGTCCCAAGGTAGCCCTTCTATG
CTGAGTATACTGTCACCTATCAACTTATTCTAGTATTAGCTAGGATTTAT
TCTATTTCCTGCTCCACTGTTAAAAGTTTGGTTTTGAAACATCTCTGGCC
AGTTTTGAATTCAATGCTACTCCCTTTAAAAGTATTTAGGGGAATTTTT
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTGTCAGGAATGAGCTAAAATACGTCTG
AATTCACTTTTGTTTTTTAAAAGTTCTTCACTGGCAATACCTTGCCTGCA
AAGAATGAGCTCCAAAATATTAACTTATCAGACCAGGGAGTCCATTTCAT
AGAAGAGGAAGTTGGGGAGTGAGGATCATGGAGTGTTCCTGTGTTGTTAT
ACTCCATCACCCGTAGGCTTCCAACTGAGTGGAAAGAAGAAACGCCTGAG
AGAGACACACGGAAGTGCCATCTTAAAAACATTCTGTGAAGAGCCACCCT
GTGGCATCAAAGCCTGTGACACAAGCTTGTGACTTCAGCCTGGTTCTAGA
AAACTAAGAGGTGGAACCAGAAGGTCTACTCCCTGCTTGCAGGGACCATT
TAGGGAGGCAGGTGCTTCCTGCACAGCACAGCTCTGGGATCTTTAGCTGC
AAAGGTCTTAGCTTCCAAAGATACTCGCTTAGCTCGAATCTACCAGTGGG
AGCCAGCGGGAGAGTTGCTCAATGGTCTAGAATTTGGCTACTATTTACAA
CACCCTGGCTTAATTCCCAGTCCTGAACAAAAGAGAATGATAGTTCTTGT
TGCTAACGGAATCATTTTATCTCAAGCTGGAAGAAAGGTTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p08.b1 MSMg01no059_p08.b1 CHROMAT_FILE:
MSMg01no059_p08.b1 PHD_FILE: MSMg01no059_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (470 letters)



>mm_chr7_38195480_38196349
          Length = 870

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Minus

                                                                       
Query: 133 tgctctgcaagagccaagtgcccagcacaccacagggaaattctaggcaagctcctactg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgctctgcaagagccaagtgcccagcacaccacagggaaattctaggcaagctcctactg 811

                                                                       
Query: 193 agccacacccccagcccctcactgggggattctaggcaggggctctaccactgagccaca 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 agccacacccccagcccctcactgggggattctaggcaggggctctaccactgagccaca 751

                                                                       
Query: 253 cccccagtccctcactggggaattctaggcaggggctctactactgagtcacaccccagt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cccccagtccctcactggggaattctaggcaggggctctactactgagtcacaccccagt 691

                                                                       
Query: 313 ccctctctggggggttctagttccatgtccttttttctttaaatttggagacagaaccaa 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ccctctctggggggttctagttccatgtccttttttctttaaatttggagacagaaccaa 631

                                                                       
Query: 373 tggatacattgccccaatctgactttgaactcaggctatagcccaaacagtcctgaaatg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tggatacattgccccaatctgactttgaactcaggctatagcccaaacagtcctgaaatg 571

                                                 
Query: 433 tatggccatcctacctcagcttctcactacttggacct 470
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tatggccatcctacctcagcttctcactacttggacct 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no059_p08.g1 MSMg01no059_p08.g1 CHROMAT_FILE:
MSMg01no059_p08.g1 PHD_FILE: MSMg01no059_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:35 2005
         (457 letters)



>mm_chr7_38073452_38074308
          Length = 857

 Score =  884 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtcaggaatgagctaaaatacgtctgaattcacttttgttttttaaaagttcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtcaggaatgagctaaaatacgtctgaattcacttttgttttttaaaagttcttca 260

                                                                       
Query: 61  ctggcaataccttgcctgcaaagaatgagctccaaaatattaacttatcagaccagggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggcaataccttgcctgcaaagaatgagctccaaaatattaacttatcagaccagggag 320

                                                                       
Query: 121 tccatttcatagaagaggaagttggggagtgaggatcatggagtgttcctgtgttgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccatttcatagaagaggaagttggggagtgaggatcatggagtgttcctgtgttgttat 380

                                                                       
Query: 181 actccatcacccgtaggcttccaactgagtggaaagaagaaacgcctgagagagacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actccatcacccgtaggcttccaactgagtggaaagaagaaacgcctgagagagacacac 440

                                                                       
Query: 241 ggaagtgccatcttaaaaacattctgtgaagagccaccctgtggcatcaaagcctgtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtgccatcttaaaaacattctgtgaagagccaccctgtggcatcaaagcctgtgac 500

                                                                       
Query: 301 acaagcttgtgacttcagcctggttctagaaaactaagaggtggaaccagaaggtctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagcttgtgacttcagcctggttctagaaaactaagaggtggaaccagaaggtctact 560

                                                                       
Query: 361 ccctgcttgcagggaccatttagggaggcaggtgcttcctgcacagcacagctctgggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgcttgcagggaccatttagggaggcaggtgcttcctgcacagcacagctctgggat 620

                                                
Query: 421 ctttagctgcaaaggtcttagcttccaaagatactcg 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagctgcaaaggtcttagcttccaaagatactcg 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)