BAC Information

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BAC

Clone NameMSMg01-059P14
Chromosome7 (Build37)
Map Location 109,651,137 - 109,651,584
singlet/doubletsinglet
Overlap genenone
Upstream genePde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog, Stim1, Rrm1, Olfr543, Olfr544, Olfr545
Downstream geneLOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059P14.T7 (MSMg01no059_p14.b1)MSMg01-059P14.TJ (MSMg01no059_p14.g1)
ACCAG286527AG286528
length698687
length of high quality
(start - end)		368 (52 - 419)511 (76 - 586)
definitionCHROMAT_FILE: MSMg01no059_p14.b1 PHD_FILE: MSMg01no059_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:36 2005CHROMAT_FILE: MSMg01no059_p14.g1 PHD_FILE: MSMg01no059_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATGC
GCGGAATTCTTTGTTTATCCCTGTACCCCATTTTTAATGGGGTTATTTGA
ATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTC
CCCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAGTCTGTTGGTTGC
CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTT
CATGAGGTTCCATTTGTCAATTCTTGATCTTACAGCACAAGCCATTACTG
TTCTGTTTAAGAATTTTTCCCCAGTGCCTTTATCTTCGAGGCTTTTCCCC
ACTTTCTCCTCTATAACTTTCAGTGCCTCTGGTTTTATGTGGAGTTCTTT
GATCCACTTAGACTTGAGCTTCGCACAAGGAGATAAGAATGGATCAATTC
GCATTCTTCTACATGATAATCACCAGTTGTGTCCGCTCCATTTGTTGAAA
ATGCTGACTTTTTTTTTTTTTTTACACTGCCATGATTTTAGTTCCCTTGT
CTAAGATCAAGTGATCATAGTTGTGTGGATTCATCTCCTGCCCTTCCTCT
TTTATCTTCTATAATCTACCTGTTTGTGTTTTGATACAATTTCCCGTATG
CTCCATTTTCCCTTCACCCCTCATTTCTATTGTATTCTCTCCTCCCTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAGAAGAACTTGGAAGCAGGACC
TGAAGCAGAGACCATGGAGGAACACTGCTTACTGGTTCACTCCCAGGCTC
ACATTCAGTTGCCTTCCCTGCACCTCACAGGACCATCTGCCAACGGCTGG
CATTGCCCAGACTTAGTTAGACCCTTCCACGTCAATCAACAAACAAACAA
AAACAAAAAACATCACATACACATGCCTACAGGCCAATCTGATGAAGTTT
TTTTTCCTCTCTCTCTGAGGGTCCCTCTTTCTAGTTTGTATCTGATTACT
AAAGATTAAATGATACACCCCACCAGAAGAGACAGAGGATTTGACACACC
TGACCATCTCCACTGAGAGAGATCAGGGGAGGAAAGCTTAGGACAGGACA
CTTTGGAGACCTAGAAGGAGGAAAGAGAAGAGGGATGGTGGACACAGGGC
TGCCCAAAGTCCTGGGGTAGAGTAAGGACTACTGAGGGATTGACAAGCCA
GGTGGGCTGCCCAGTGCCCCTCTGCAATGATGGTGCACAGTGGTGGCACC
AGCCACTATACCCCTTCTGCTGAAAGATTCAGGGGACTGTGACAAAGGTT
GGCAAGGAGGCTTCCAGAGATGGTGGTACCTGCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_p14.g1 MSMg01no059_p14.g1 CHROMAT_FILE:
MSMg01no059_p14.g1 PHD_FILE: MSMg01no059_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:36 2005
         (511 letters)



>mm_chr7_109650670_109651584
          Length = 915

 Score =  839 bits (434), Expect = 0.0
 Identities = 443/448 (98%), Gaps = 4/448 (0%)
 Strand = Plus / Minus

                                                                       
Query: 68  ccaggctcacattcagttgccttccctgcacctcacaggaccatctgccaacggctggca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 ccaggctcacattcagttgccttccctgcacctcacaggaccatctgccaacggctggca 856

                                                                       
Query: 128 ttgcccagacttagttagacccttccacgtcaatcaacaaacaaacaaaaacaaaaaaca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttgcccagacttagttagacccttccacgtcaatcaacaaacaaacaaaaacaaaaaaca 796

                                                                       
Query: 188 tcacatacacatgcctacaggccaatctgatgaagttttttttcctctctctctgagggt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcacatacacatgcctacaggccaatctgatgaagttttttttcctctctctctgagggt 736

                                                                       
Query: 248 ccctctttctagtttgtatctgattactaaagattaaatgatacaccccaccagaag--- 304
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 735 ccctctctctagtttgtatctgattactaaagattaaatgatacaccccaccagaagaga 676

                                                                       
Query: 305 -agacagaggatttgacacacctgaccatctccactgagagagatcaggggaggaaagct 363
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cagacagaggatttgacacacctgaccatctccactgagagagatcaggggaggaaagct 616

                                                                       
Query: 364 taggacaggacactttggagacctagaaggaggaaagagaagagggatggtggacacagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taggacaggacactttggagacctagaaggaggaaagagaagagggatggtggacacagg 556

                                                                       
Query: 424 gctgcccaaagtcctggggtagagtaaggactactgagggattgacaagccaggtgggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gctgcccaaagtcctggggtagagtaaggactactgagggattgacaagccaggtgggct 496

                                       
Query: 484 gcccagtgcccctctgcaatgatggtgc 511
           ||||||||||||||||||||||||||||
Sbjct: 495 gcccagtgcccctctgcaatgatggtgc 468


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 915
Length adjustment: 10
Effective length of query: 501
Effective length of database: 905
Effective search space:   453405
Effective search space used:   453405
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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