BAC Information

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BAC

Clone NameMSMg01-060H10
Chromosome7 (Build37)
Map Location 59,321,381 - 59,413,546
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H10.T7 (MSMg01no060_h10.b1)MSMg01-060H10.TJ (MSMg01no060_h10.g1)
ACCAG286901AG286902
length701689
length of high quality
(start - end)
328 (66 - 393)461 (70 - 530)
definitionCHROMAT_FILE: MSMg01no060_h10.b1 PHD_FILE: MSMg01no060_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:12 2005CHROMAT_FILE: MSMg01no060_h10.g1 PHD_FILE: MSMg01no060_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,321,381 - 59,321,704)(59,413,086 - 59,413,546)
sequence
CTAATCCTTCCATCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAATTATCTGTTTAGATTCTACATGCTCTAT
CTTTTTGAAGGTGGCCAGTGTTTGCTGCAGGATGCATGATGTCTAACCTT
TATTAGTGTGAAGACTCATGATTGTATAAACATTACCAAAGTACCCAGAT
GTCCCTTTCATCTGTATCTACTGTTTCTTTTCCTAGAGTGGCATTGATTT
CTCTTTCTCATTGCTTTTTCTTCCTCGGCACAAATGTCTGTCCCTCTGCA
CAGATGCTGGTCTCTCCCTCTCTCCCTCCCCCATCCTTCCCCTGTCCCTC
TCTTCTCTCTCCTCCTTCTTTTCTTTCTTCGGTCTTTCAAGGCCAGAGGG
GAATTTTGGTCAGATTGTTGATCAGAGCTATTTGTCTTGAACATATTATA
ACTTAAATATCATCACACCACCAGTAAGAGACAGTAATGATTCCCTATTG
TGGCAGACAACCACAGGTAGAAGGCCAGGTGGCGCTTGTCATTCTTGCCC
TGTGAGGAGCCAGGTGCGTGGACTGGACTAACCATCTAGTCTATCTGATA
GCACCCGCTGTACACTACAGGCCATGAGCCCCGATAGCACTCACGTCACT
TAGTTCGGCTCTTAAACAACTTCGACTATGCTTCAAGAACTCTACTGTTT
N
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGCCACTCAAGGTCTCCCAGCCTCCAGAT
TAGGATCACTGGTGAGCCTTCCAATTATGGATTGTAGTTCATTTCAAATA
TAGTCAAGTTGACAACCAGGAATAGCCACTACACTCAGCCATCACATTTC
CTACTATCCAACCATCAAAACAGATGTTATCTTTCCTTGTGGTGAATATT
CATATCCTTAAGTACCCACACTCTGGTATCTTTGTTATTTGGAATAAGTT
CTCTTCTGACTTCTGCTTACTACACATCTTCCCAGCCTCCAGATATGTTC
ATATGTCTAGGAACTCATTCCTTCCTTCTTTTCCATTGAGATCTTCAGAA
TAGGCTTTGATTAAGCTGTCTATGGAGCCATTCTAATTAAAGCCACTCTG
TAGCAAGGTCACTCCACTCCATTCATATGCCAGGGAGAATGCCAGAATGA
TGCTGTTTGATTTCTATATTTCTGCAGCATAATGTGAAATCCCAGATGAT
GACAACCTCAGAAATGGTTTTGAATTATTCATTTAGTTCAAGTTAGGTTT
TACTATCCTCAGTCTTCGGTTTCTTTATGAATTTTGATTTTTTAAAAGAT
TTCTATGAAAAACCGGGTCGGAATTTTGAGGGAAATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h10.b1 MSMg01no060_h10.b1 CHROMAT_FILE:
MSMg01no060_h10.b1 PHD_FILE: MSMg01no060_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:12 2005
         (328 letters)



>mm_chr7_59321181_59321908
          Length = 728

 Score =  559 bits (289), Expect = e-164
 Identities = 316/325 (97%), Gaps = 2/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcaattatctgtttagattctacatgctctatctttttgaaggtggccagtgtttgc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcaattttctgtttagattctacatgctctatctttttgaaggtggccagtgtttgc 260

                                                                       
Query: 61  tgcaggatgcatgatgtctaacctttattagtgtgaagactcatgattgtataaacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaggatgcatgatgtctaacctttattagtgtgaagactcatgattgtataaacatta 320

                                                                       
Query: 121 ccaaagtacccagatgtccctttcatctgtatctactgtttcttttcctagagtggcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagtacccagatgtccctttcatctgtatctactgtttcttttcctagagtggcatt 380

                                                                       
Query: 181 gatttctctttctcattgctttttcttcctcggcacaaatgtctgtccctctgcacagat 240
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gatttctctttctcatggctttttcttcctctgcacaaatgtctgtccctctgcacagat 440

                                                                       
Query: 241 gctggtctctccctctc-tccctcccccatccttcccctgtccctctcttctctctcctc 299
           ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 441 gctggtctctccctc-catccctcccccatccttctcctgtccctctcttctctctcatc 499

                                    
Query: 300 cttcttttctttcttcggtctttca 324
           ||||||||||||||| |||| ||||
Sbjct: 500 cttcttttctttctttggtccttca 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_h10.g1 MSMg01no060_h10.g1 CHROMAT_FILE:
MSMg01no060_h10.g1 PHD_FILE: MSMg01no060_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:12 2005
         (461 letters)



>mm_chr7_59412772_59413632
          Length = 861

 Score =  837 bits (433), Expect = 0.0
 Identities = 454/461 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagccactcaaggtctcccagcctccagattaggatcactggtgagccttccaattatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 775 atagccactcaaggtctcccagcctccagattaggatcactggtgagccttccaattctg 716

                                                                       
Query: 61  gattgtagttcatttcaaatatagtcaagttgacaaccaggaatagccactacactcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gattgtagttcatttcaaatatagtcaagttgacaaccaggaatagccactacactcagc 656

                                                                       
Query: 121 catcacatttcctactatccaaccatcaaaacagatgttatctttccttgtggtgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 catcacatttcctactatccaaccatcaaaacagatgttatctttccttgtggtgaatat 596

                                                                       
Query: 181 tcatatccttaagtacccacactctggtatctttgttatttggaataagttctcttctga 240
           |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 595 tcatatccttaagtacccacactctggtgtctttgttacttggaataggttctcttctga 536

                                                                       
Query: 241 cttctgcttactacacatcttcccagcctccagatatgttcatatgtctaggaactcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 cttctgcttactacacatcttcccagcctccagatatgttcatatgtctaggaactcatt 476

                                                                       
Query: 301 ccttccttcttttccattgagatcttcagaataggctttgattaagctgtctatggagcc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctaccttcttttccattgagatcttcagaataggctttgattaagctgtctatggagcc 416

                                                                       
Query: 361 attctaattaaagccactctgtagcaaggtcactccactccattcatatgccagggagaa 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 attctaattaaagccattctgtagcaaggtcactccactccattcatatgccagggagaa 356

                                                    
Query: 421 tgccagaatgatgctgtttgatttctatatttctgcagcat 461
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 355 tgccagaatgatgctgtttgatttctgtatttctgcagcat 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)