BAC Information

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BAC

Clone NameMSMg01-060K08
Chromosome7 (Build37)
Map Location 15,699,170 - 15,699,487
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381
Downstream geneLOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060K08.T7 (MSMg01no060_k08.b1)MSMg01-060K08.TJ (MSMg01no060_k08.g1)
ACCAG287041AG287042
length740734
length of high quality
(start - end)
99 (71 - 169)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no060_k08.b1 PHD_FILE: MSMg01no060_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005CHROMAT_FILE: MSMg01no060_k08.g1 PHD_FILE: MSMg01no060_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AATTTGCGGCGCTAAACGACTCCTATTCCCACAGGATCCGCGGAATTCTT
AATATTGCCCATCAAATGTCTGAGAAACAAAGAAATATTCAACTTCATTA
ACTGTCAGCGAAATACAAATCAAAACTACTTTGAGATTCCATAATAGACC
TATTATGATAGCGAAGGTCAATAACACCATTAATGTCTTATGCTGTTATT
GAGGAAGGGGACTCTCCTTCATCACTGGAATTCAGTGGAGAGGTTAGTCC
CAATATGGGGTTGCACATTTCTGCCGTTCCAGCTGTATCCTTCCTGCACA
TATATTAAAGTTTTGCTTATCCCTACTACTTGGTCCCTTAATCTCCAGTG
TATTTTGCTTCTCTATTCGCCCGAGCCAGCTCATACACAATATTTCATCT
GTCTGCTGCCCCCCTCTCACTTCCCTCCGCCCTGCCTGTGTCATCCCTTT
ATCGTTATACTTCCCTCTCTTTCCCCTATTATCCATCTCCCCCCTTCCCT
CTCCTCCTTCTTTCCTCCACTTCCATTTCCCCCCCCTTCTTCAACATCAC
CCCCTTTTTTATCCCTTCCCTTGATACCGTAATTTTCCCCCTATCCTTAT
TTTCTTCCTCCTTCCCCCCCCTCTTCTTCTTCTCTCCTTCTTTCTCTTTC
TCTCCCTATCTTCTATCTTTTTCTCTTTCCCCCATTTCTACCCCTTTCCC
TCTATCTCTTCGTTACGACTTATCCCTTCTTCCCCCTCTG
CACTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATCTTTT
AAGGGGGTTATTTGATTTTGTGGAGTCCACCCTCTTGAGTTCTTTATATA
TATTGAATAGTCCCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAA
TCTGTTTATGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCCTTGCAGAA
GCTTTGCAGTTTCATGAGGTCCAATTTGTCAATCCTCGTTCTTACAGCAC
AAGCCATTGCTGTTGTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCG
AGGCTTTTATGTGAGTTATTCAGCAGAAAGACTCCAAGATGACAGTTACA
TCAAAGGAAATAACAGATACATTTATATCCTGGTCATTGTCGTAGTGGTC
AAAAACAGAGAGGGTTGATTCAAGCAAGGCATAATAACTTCCTGGTTATC
TGGTGAGTTTGTCTTGCGAATAAAGTTTGTGTATGATGTGTAGGATTGGA
GGCTTACTCCCTTACCCCCTAGCGTGCCCTTTCTACCAACCCTCTTCGTT
TTTTCGGAATCTATAATTTCGCACTCCCCACGTAACTCCCCTCGCTATTC
ACCTATTCTTTTACACCCCTTGGCCGCACCCACTTCGCAAATTTTGAACC
GAAACCCCCACGCACCCCTTTTCTTCTATAGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_k08.g1 MSMg01no060_k08.g1 CHROMAT_FILE:
MSMg01no060_k08.g1 PHD_FILE: MSMg01no060_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:25 2005
         (472 letters)



>mm_chr7_15698616_15699487
          Length = 872

 Score =  561 bits (290), Expect = e-164
 Identities = 311/318 (97%)
 Strand = Plus / Minus

                                                                       
Query: 155 aaggtgtcttttgccttgcagaagctttgcagtttcatgaggtccaatttgtcaatcctc 214
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 872 aaggtgtcttttgccttgcagaagctttgcagtttcatgaggtcccatttgtcaatcctc 813

                                                                       
Query: 215 gttcttacagcacaagccattgctgttgtattcaggaatttttcccctgtgcccatatct 274
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cttcttaaagcacaagccattgctgttgtattcaggaatttttcccctgtgcccatatct 753

                                                                       
Query: 275 tcgaggcttttatgtgagttattcagcagaaagactccaagatgacagttacatcaaagg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tcgaggcttttatgtgagttattcagcagaaagactccaagatgacagttacatcaaagg 693

                                                                       
Query: 335 aaataacagatacatttatatcctggtcattgtcgtagtggtcaaaaacagagagggttg 394
           |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 692 aaataagagatacatttatatcctggtcattgtcgtagtggtcaaacacagagagggttg 633

                                                                       
Query: 395 attcaagcaaggcataataacttcctggttatctggtgagtttgtcttgcgaataaagtt 454
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 632 attcaagcaaggcataataacttcctggttatctggtgaatttgtcttgtgaataaagtt 573

                             
Query: 455 tgtgtatgatgtgtagga 472
           ||||||||||||||||||
Sbjct: 572 tgtgtatgatgtgtagga 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)