BAC Information

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BAC

Clone NameMSMg01-060L11
Chromosome7 (Build37)
Map Location 150,515,708 - 150,516,311
singlet/doubletsinglet
Overlap geneKcnq1
Upstream gene6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5
Downstream geneCdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498, Shank2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L11.T7 (MSMg01no060_l11.b1)MSMg01-060L11.TJ (MSMg01no060_l11.g1)
ACCAG287095AG287096
length707826
length of high quality
(start - end)
604 (65 - 668)79 (98 - 176)
definitionCHROMAT_FILE: MSMg01no060_l11.b1 PHD_FILE: MSMg01no060_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:31 2005CHROMAT_FILE: MSMg01no060_l11.g1 PHD_FILE: MSMg01no060_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGCGGAA
TTCATAGATGCCAGCCTGACTCCCAAACTCCATTTCCATGTTACTTTGAA
CAAGTACTGGCTTTCCTGCCAGGTCCATCTCTATGGGGGACAAGGGATAT
AGATGACATTAGCTGGATCTTTTGAAGTGGCCTTGAGGGTCTACCTCACC
CTGTACCTCCCCACTACCACCCCATATTCCTACTGTATCAGGCATCCATA
ATCAACGCAGGAACCCATCCCATGGTAGCTTGGCTCCCTTAGTGCCTGCA
GGTAACAGATTTCCAGCCTCCAAATAAGGCACAGATGGACCAGTTGAAGT
GATTTAAGGACAGCAGTGGGTTCAAGATCACTGTTGACTGATGATACCAT
ATGATAAGCTAATCCTGGCCAAAGATATAGCATGATGGGACATGTATAAG
GTGGCCAGTGTTTCTGTTATACAAAGGAAGGCCAATGACAAGGCAACTTT
GCTCTGGTCACACGTGGCCATTTCCCTTCTAAAGGGGTTTAAGCCCTCCT
CTCAGACTTGGGGAGTTGGTGGCTTAGGAACTTGTTCATATTCAGCCGGG
CCCACCATCAGCCCCACCCCTTGACTTTAAGACAGTGAGTCCCACAGATC
TTGAGAGGAGCTGACACTGGTCCAGACATTAGGCTCTCTTGTGGGTACGA
GATGACT
CGCTTCTTTCTCTATGATATGGTAGGCTGGCGGCGCCTGGTTTCAAATTT
AGGTGAACTATAGAATTTCCCCGAACTCCAGGTCTTATACTCAGTGAATG
AAGTCTTTATCCAGTGAATTTTGACTCTCTTGCGCCCTACATTTATGAGT
AGACATGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTCT
GTGTTTCCCCTCTTGCCCCTTTATTTTTCCCCTCCTTTTTCCCTCCTTCC
TTGATTCCCCCTCCCCTCTTCCCTCTCCCCTCCCGCCCCACCCACCCACC
CTATGCTATTTCCTATCTATTTTTTTTTTTTTTGTAAATTTATGTCTCTT
CTCACCTCTCCTTTTTCCTCTTCCTCTCTCCTTCCCTTTATCCCCCATTC
CCGTATCCATTCTCTTTCCTTCTCTTCTTCCCCCTTTCTTTTTTCCGGCC
CCCCCTTATTCTCTCCTTTTACACCTCTTTCCCTTCTTAATTTTTCCCCC
CCACCTTTTCCCTTTAACACCTTTCTTACATTCCAAACCTCCAATACTTT
TGTCTCACCTCCCCCTCATTTCCTATGACTATCCTCCCATACAAACCTCC
CCCGTCCCCTTCCCTTCCCTCACTTGCCATTGTACCAATTTCCCATTCTA
GTACCCGTTCCCCCCTTTTTCCACATTTTTTTCTTCTTTTCCTTTTTCTC
CTTTTTTCCCCTCTCTCCCTACTTTTCCCCCCTCTCCTTTCCTTTCTTTT
TTTCACTATACCCTCACTTCCTACCTTCACTTCACCCTCCTACCACTGAC
GTACACCTTTCATTCTATCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l11.b1 MSMg01no060_l11.b1 CHROMAT_FILE:
MSMg01no060_l11.b1 PHD_FILE: MSMg01no060_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:31 2005
         (604 letters)



>mm_chr7_150515508_150516511
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgactcccaaactccatttccatgttactttgaacaagtactggctttcctgccaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgactcccaaactccatttccatgttactttgaacaagtactggctttcctgccaggt 260

                                                                       
Query: 61  ccatctctatgggggacaagggatatagatgacattagctggatcttttgaagtggcctt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctctatggggggcaagggatatagatgacattagctggatcttttgaagtggcctt 320

                                                                       
Query: 121 gagggtctacctcaccctgtacctccccactaccaccccatattcctactgtatcaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagggtctacctcaccctgtacctccccactaccaccccatattcctactgtatcaggca 380

                                                                       
Query: 181 tccataatcaacgcaggaacccatcccatggtagcttggctcccttagtgcctgcaggta 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatagtcaacgcaggaacccatcccatggtagcttggctcccttagtgcctgcaggta 440

                                                                       
Query: 241 acagatttccagcctccaaataaggcacagatggaccagttgaagtgatttaaggacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagatttccagcctccaaataaggcacagatggaccagttgaagtgatttaaggacagc 500

                                                                       
Query: 301 agtgggttcaagatcactgttgactgatgataccatatgataagctaatcctggccaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgggttcaagatcactgttgactgatgataccatatgataagctaatcctggccaaag 560

                                                                       
Query: 361 atatagcatgatgggacatgtataaggtggccagtgtttctgttatacaaaggaaggcca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 atatagcatgatgggacatgtataaggtggccagtgtttctgttatacaaaggaagacca 620

                                                                       
Query: 421 atgacaaggcaactttgctctggtcacacgtggccatttcccttctaaaggggtttaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgacaaggcaactttgctctggtcacacgtggccatttcccttctaaaggggtttaagc 680

                                                                       
Query: 481 cctcctctcagacttggggagttggtggcttaggaacttgttcatattcagccgggccca 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 cctcctctcagacttggggagctggtggcttaggaacttgttcatattcagccaggccca 740

                                                                       
Query: 541 ccatcagccccaccccttgactttaagacagtgagtcccacagatcttgagaggagctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccatcagccccaccccttgactttaagacagtgagtcccacagatcttgagaggagctga 800

               
Query: 601 cact 604
           ||||
Sbjct: 801 cact 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)